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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g179961v5   uncharacterized protein 
 ath-u.5   TIL1   DNA polymerase epsilon catalytic subunit 
 gma-u.5   100812003   DNA polymerase epsilon catalytic subunit A 
 gma-u.5   100778115   DNA polymerase epsilon catalytic subunit A-like 
 sly-u.5   101253967   DNA polymerase epsilon catalytic subunit A-like 
 osa-u.5   4329458   DNA polymerase epsilon catalytic subunit A 
 zma-u.5   103627197   DNA polymerase epsilon catalytic subunit A 
 vvi-u.5   100241432   DNA polymerase epsilon catalytic subunit A 
 ppo-u.5   18097958   DNA polymerase epsilon catalytic subunit A-like 
 mtr-u.5   11445193   DNA polymerase epsilon catalytic subunit A 

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Top 50 coexpressed genes to CHLRE_03g179961v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g179961v5 (cre-r.1 coexpression data)

CoexMap"5728795"


creCHLRE_03g179961v5 | Entrez gene ID : 5728795    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03410 [list] [network] Base excision repair (25 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006287 [list] [network] base-excision repair, gap-filling  (3 genes)  IEA  
GO:0045004 [list] [network] DNA replication proofreading  (3 genes)  IEA  
GO:0006272 [list] [network] leading strand elongation  (4 genes)  IEA  
GO:0006297 [list] [network] nucleotide-excision repair, DNA gap filling  (6 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO:0000278 [list] [network] mitotic cell cycle  (160 genes)  IEA  
GO CC
GO:0008622 [list] [network] epsilon DNA polymerase complex  (3 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008310 [list] [network] single-stranded DNA 3'-5' DNA exonuclease activity  (3 genes)  IEA  
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (22 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (213 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (1539 genes)  IEA  
Protein XP_042926160.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 1,  E.R. 1,  plas 1,  vacu 1,  cyto_mito 1,  cysk_nucl 1,  cyto_E.R. 1  (predict for XP_042926160.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042926160.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g179961v5

.
ath-u.5
for
TIL1

.
gma-u.5
for
100812003

.
gma-u.5
for
100778115

.
sly-u.5
for
101253967

.
osa-u.5
for
4329458

.
zma-u.5
for
103627197

.
vvi-u.5
for
100241432

.
ppo-u.5
for
18097958

.
mtr-u.5
for
11445193

.


Ortholog ID: 9400
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol TIL1 LOC100778115 LOC100812003 LOC101253967 LOC4329458 LOC103627197 LOC103871570 LOC100241432 LOC18097958 LOC11445193 LOC123078194 LOC123180924 LOC123429570 LOC107943981 LOC107959376 LOC106346351 LOC106413546 CHLRE_03g179961v5 LOC8056089 LOC102599922 LOC102608212 LOC100829409 LOC107791916 LOC107775468
Function* DNA polymerase epsilon catalytic subunit DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A uncharacterized protein DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A-like DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A DNA polymerase epsilon catalytic subunit A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 4
ath03410 Base excision repair 3
ath03430 Mismatch repair 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03440 Homologous recombination 4
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 6
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 3
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 3
zma03430 Mismatch repair 3
zma03030 DNA replication 3
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 2
bra03030 DNA replication 2
bra03440 Homologous recombination 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03440 Homologous recombination 4
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
vvi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 11
ppo03420 Nucleotide excision repair 3
ppo03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 10
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae00270 Cysteine and methionine metabolism 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae00270 Cysteine and methionine metabolism 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 8
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
bna00052 Galactose metabolism 2
bna00511 Other glycan degradation 2
bna00531 Glycosaminoglycan degradation 2
bna00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 6
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 4
sot03440 Homologous recombination 4
sot03030 DNA replication 4
sot00270 Cysteine and methionine metabolism 3
sot03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 9
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837346 100778115 100812003 101253967 4329458 103627197 103871570 100241432 18097958 11445193 123078194 123180924 123429570 107943981 107959376 106346351 106413546 5728795 8056089 102599922 102608212 100829409 107791916 107775468
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