ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100837816	photosystem I reaction center subunit XI, chloroplastic
tae-r.2	123076982	photosystem I reaction center subunit XI, chloroplastic
tae-r.2	123068464	photosystem I reaction center subunit XI, chloroplastic
tae-r.2	123060002	photosystem I reaction center subunit XI, chloroplastic
hvu-r.1	123442593	photosystem I reaction center subunit XI, chloroplastic
osa-u.5	4352085	photosystem I reaction center subunit XI, chloroplastic
zma-u.5	100281679	photosystem I reaction center subunit XI
zma-u.5	100383080	uncharacterized LOC100383080
sbi-r.1	8078487	photosystem I reaction center subunit XI, chloroplastic
ath-u.5	PSAL	photosystem I subunit l
gma-u.5	100500317	uncharacterized LOC100500317
gma-u.5	100527240	uncharacterized LOC100527240
sly-u.5	101265249	photosystem I reaction center subunit XI, chloroplastic
sly-u.5	101265555	photosystem I reaction center subunit XI, chloroplastic
bra-r.6	103863666	photosystem I reaction center subunit XI, chloroplastic
bra-r.6	117127362	photosystem I reaction center subunit XI, chloroplastic
vvi-u.5	100242802	photosystem I reaction center subunit XI, chloroplastic
ppo-u.5	7471126	photosystem I reaction center subunit XI, chloroplastic
ppo-u.5	7463368	photosystem I reaction center subunit XI, chloroplastic
mtr-u.5	11408159	photosystem I reaction center subunit XI, chloroplastic
ghi-r.1	107933978	photosystem I reaction center subunit XI, chloroplastic
ghi-r.1	107954721	photosystem I reaction center subunit XI, chloroplastic
ghi-r.1	107954007	photosystem I reaction center subunit XI, chloroplastic
bna-r.1	111201397	photosystem I reaction center subunit XI, chloroplastic-like
bna-r.1	106429320	photosystem I reaction center subunit XI, chloroplastic
bna-r.1	106415248	photosystem I reaction center subunit XI, chloroplastic-like
sot-r.1	102602832	photosystem I reaction center subunit XI, chloroplastic
sot-r.1	102592900	photosystem I reaction center subunit XI, chloroplastic-like
sot-r.1	102592564	photosystem I reaction center subunit XI, chloroplastic
cit-r.1	102609622	photosystem I reaction center subunit XI, chloroplastic
nta-r.1	107810830	photosystem I reaction center subunit XI, chloroplastic-like
nta-r.1	107769513	photosystem I reaction center subunit XI, chloroplastic
nta-r.1	107768924	photosystem I reaction center subunit XI, chloroplastic
cre-r.1	CHLRE_12g486300v5	uncharacterized protein

Top 50 coexpressed genes to 100837816 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100837816 (bdi-r.1 coexpression data)

CoexMap"100837816"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi00195 [list] [network] Photosynthesis (75 genes)

GO BP

GO:0015979 [list] [network] photosynthesis

(82 genes)

IEA

GO CC

GO:0009538 [list] [network] photosystem I reaction center	(5 genes)	IEA
GO:0009522 [list] [network] photosystem I	(9 genes)	IEA
GO:0009535 [list] [network] chloroplast thylakoid membrane	(72 genes)	IEA

GO MF

Protein

XP_003576628.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1, vacu 1

(predict for XP_003576628.1)

Subcellular
localization
TargetP

chlo 6

(predict for XP_003576628.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100837816	tae-r.2 for 123076982	tae-r.2 for 123068464	tae-r.2 for 123060002	hvu-r.1 for 123442593	osa-u.5 for 4352085	zma-u.5 for 100281679	zma-u.5 for 100383080	sbi-r.1 for 8078487	ath-u.5 for PSAL	gma-u.5 for 100500317	gma-u.5 for 100527240	sly-u.5 for 101265249	sly-u.5 for 101265555	bra-r.6 for 103863666	bra-r.6 for 117127362	vvi-u.5 for 100242802	ppo-u.5 for 7471126	ppo-u.5 for 7463368	mtr-u.5 for 11408159	ghi-r.1 for 107933978	ghi-r.1 for 107954721	ghi-r.1 for 107954007	bna-r.1 for 111201397	bna-r.1 for 106429320	bna-r.1 for 106415248	sot-r.1 for 102602832	sot-r.1 for 102592900	sot-r.1 for 102592564	cit-r.1 for 102609622	nta-r.1 for 107810830	nta-r.1 for 107769513	nta-r.1 for 107768924	cre-r.1 for CHLRE_12g486300v5

Ortholog

Ortholog ID: 5540

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PSAL

Function^*