ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100846789	probable mediator of RNA polymerase II transcription subunit 36b
bdi-r.1	100840221	probable mediator of RNA polymerase II transcription subunit 36b
tae-r.2	123139921	rRNA 2'-O-methyltransferase fibrillarin 1
tae-r.2	123129055	rRNA 2'-O-methyltransferase fibrillarin 1
tae-r.2	123146227	rRNA 2'-O-methyltransferase fibrillarin 1
hvu-r.1	123404338	rRNA 2'-O-methyltransferase fibrillarin 1-like
hvu-r.1	123407385	rRNA 2'-O-methyltransferase fibrillarin 1-like
osa-u.5	4331181	rRNA 2'-O-methyltransferase fibrillarin 2
osa-u.5	9266224	rRNA 2'-O-methyltransferase fibrillarin 1
zma-u.5	100282167	uncharacterized LOC100282167
sbi-r.1	8065563	probable mediator of RNA polymerase II transcription subunit 36b
sbi-r.1	8059696	probable mediator of RNA polymerase II transcription subunit 36b
ath-u.5	FIB2	fibrillarin 2
ath-u.5	FIB1	fibrillarin 1
gma-u.5	100788688	rRNA 2'-O-methyltransferase fibrillarin 2
gma-u.5	100789137	rRNA 2'-O-methyltransferase fibrillarin 2
gma-u.5	100797625	rRNA 2'-O-methyltransferase fibrillarin 2
sly-u.5	101261490	rRNA 2'-O-methyltransferase fibrillarin 2-like
bra-r.6	103863368	probable mediator of RNA polymerase II transcription subunit 36b
bra-r.6	103861582	mediator of RNA polymerase II transcription subunit 36a
bra-r.6	103834862	mediator of RNA polymerase II transcription subunit 36a
vvi-u.5	100266267	rRNA 2'-O-methyltransferase fibrillarin 1
ppo-u.5	7484920	rRNA 2'-O-methyltransferase fibrillarin 1
ppo-u.5	7474066	rRNA 2'-O-methyltransferase fibrillarin 1
mtr-u.5	11440720	rRNA 2'-O-methyltransferase fibrillarin 1
mtr-u.5	25496400	rRNA 2'-O-methyltransferase fibrillarin 1
ghi-r.1	121209584	rRNA 2'-O-methyltransferase fibrillarin 2
ghi-r.1	107951276	rRNA 2'-O-methyltransferase fibrillarin 2
ghi-r.1	107917830	rRNA 2'-O-methyltransferase fibrillarin 1
bna-r.1	106444625	rRNA 2'-O-methyltransferase fibrillarin 2
bna-r.1	106409785	rRNA 2'-O-methyltransferase fibrillarin 1
bna-r.1	106361337	rRNA 2'-O-methyltransferase fibrillarin 2
sot-r.1	102584645	mediator of RNA polymerase II transcription subunit 36a-like
cit-r.1	102629115	rRNA 2'-O-methyltransferase fibrillarin 1-like
nta-r.1	107779020	rRNA 2'-O-methyltransferase fibrillarin 1-like
nta-r.1	107768907	mediator of RNA polymerase II transcription subunit 36a-like
cre-r.1	CHLRE_02g077300v5	uncharacterized protein

Top 50 coexpressed genes to 100846789 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100846789 (bdi-r.1 coexpression data)

CoexMap"100846789"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03008 [list] [network] Ribosome biogenesis in eukaryotes (244 genes)

GO BP

GO:0000494 [list] [network] box C/D sno(s)RNA 3'-end processing	(2 genes)	IEA
GO:0031167 [list] [network] rRNA methylation	(25 genes)	IEA

GO CC

GO:0031428 [list] [network] box C/D methylation guide snoRNP complex	(10 genes)	IEA
GO:0032040 [list] [network] small-subunit processome	(42 genes)	IEA
GO:0005730 [list] [network] nucleolus	(178 genes)	IEA

GO MF

GO:1990259 [list] [network] histone H2AQ104 methyltransferase activity	(2 genes)	IEA
GO:0008649 [list] [network] rRNA methyltransferase activity	(21 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1239 genes)	IEA

Protein

XP_003563352.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 4, mito 1

(predict for XP_003563352.1)

Subcellular
localization
TargetP

mito 7, other 3

(predict for XP_003563352.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100846789	bdi-r.1 for 100840221	tae-r.2 for 123139921	tae-r.2 for 123129055	tae-r.2 for 123146227	hvu-r.1 for 123404338	hvu-r.1 for 123407385	osa-u.5 for 4331181	osa-u.5 for 9266224	zma-u.5 for 100282167	sbi-r.1 for 8065563	sbi-r.1 for 8059696	ath-u.5 for FIB2	ath-u.5 for FIB1	gma-u.5 for 100788688	gma-u.5 for 100789137	gma-u.5 for 100797625	sly-u.5 for 101261490	bra-r.6 for 103863368	bra-r.6 for 103861582	bra-r.6 for 103834862	vvi-u.5 for 100266267	ppo-u.5 for 7484920	ppo-u.5 for 7474066	mtr-u.5 for 11440720	mtr-u.5 for 25496400	ghi-r.1 for 121209584	ghi-r.1 for 107951276	ghi-r.1 for 107917830	bna-r.1 for 106444625	bna-r.1 for 106409785	bna-r.1 for 106361337	sot-r.1 for 102584645	cit-r.1 for 102629115	nta-r.1 for 107779020	nta-r.1 for 107768907	cre-r.1 for CHLRE_02g077300v5

Ortholog

Ortholog ID: 3718

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

FIB2

FIB1

Function^*

probable mediator of RNA polymerase II transcription subunit 36b

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 1-like

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 1

uncharacterized LOC100282167

probable mediator of RNA polymerase II transcription subunit 36b

fibrillarin 2

fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 2-like

probable mediator of RNA polymerase II transcription subunit 36b

mediator of RNA polymerase II transcription subunit 36a

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

mediator of RNA polymerase II transcription subunit 36a-like

rRNA 2'-O-methyltransferase fibrillarin 1-like

mediator of RNA polymerase II transcription subunit 36a-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03008	Ribosome biogenesis in eukaryotes	3
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	12
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03008	Ribosome biogenesis in eukaryotes	6
gma00240	Pyrimidine metabolism	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	9
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	10
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	5
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	9
ghi04626	Plant-pathogen interaction	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	13
bna03018	RNA degradation	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03008	Ribosome biogenesis in eukaryotes	5
nta03082	ATP-dependent chromatin remodeling	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta03008	Ribosome biogenesis in eukaryotes	7
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	8
cre00230	Purine metabolism	2
cre01232	Nucleotide metabolism	2
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

100846789

100840221

123139921

123159877

123165498

123404338

123407385

4331181

9266224

100282167

8065563

8059696

828668

835323

100789137

100797625

101261490

103863368

103861582

100266267

7484920

7474066

11440720

25496400

107917830

107908112

107904604

106444625

106409785

106426404

102584645

102629115

107779020

107768907

5727229

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	1	2	2	3	1	3	1	2	2	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100846789 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100846789 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**