ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_01g019750v5	uncharacterized protein
ath-u.5	TOP6B	topoisomerase 6 subunit B
gma-u.5	100809558	DNA topoisomerase 6 subunit B
sly-u.5	101263928	DNA topoisomerase 6 subunit B
osa-u.5	TOP6B	DNA topoisomerase 6 subunit B-like
zma-u.5	103632502	DNA topoisomerase 6 subunit B
bra-r.6	103869277	DNA topoisomerase 6 subunit B
vvi-u.5	100265632	DNA topoisomerase 6 subunit B
ppo-u.5	18097264	DNA topoisomerase 6 subunit B
mtr-u.5	11421475	DNA topoisomerase 6 subunit B
tae-r.2	123103413	DNA topoisomerase 6 subunit B
tae-r.2	123111610	DNA topoisomerase 6 subunit B
tae-r.2	123120981	DNA topoisomerase 6 subunit B
hvu-r.1	123394977	DNA topoisomerase 6 subunit B
ghi-r.1	121225308	DNA topoisomerase 6 subunit B
ghi-r.1	107945355	DNA topoisomerase 6 subunit B
bna-r.1	106345840	DNA topoisomerase 6 subunit B
bna-r.1	125594253	DNA topoisomerase 6 subunit B
bna-r.1	106451858	DNA topoisomerase 6 subunit B
sbi-r.1	8062034	DNA topoisomerase 6 subunit B
sot-r.1	102592185	DNA topoisomerase 6 subunit B
cit-r.1	102615212	DNA topoisomerase 6 subunit B
bdi-r.1	100844704	DNA topoisomerase 6 subunit B
nta-r.1	107815486	DNA topoisomerase 6 subunit B
nta-r.1	107763714	DNA topoisomerase 6 subunit B-like

Annotation

functional annotation

KEGG

GO BP

GO:0006265 [list] [network] DNA topological change

(8 genes)

IEA

GO CC

GO:0015935 [list] [network] small ribosomal subunit	(50 genes)	IEA
GO:0005829 [list] [network] cytosol	(481 genes)	IEA

GO MF

GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	(6 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA

Protein

XP_042928365.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9

(predict for XP_042928365.1)

Subcellular
localization
TargetP

other 8

(predict for XP_042928365.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_01g019750v5	ath-u.5 for TOP6B	gma-u.5 for 100809558	sly-u.5 for 101263928	osa-u.5 for TOP6B	zma-u.5 for 103632502	bra-r.6 for 103869277	vvi-u.5 for 100265632	ppo-u.5 for 18097264	mtr-u.5 for 11421475	tae-r.2 for 123103413	tae-r.2 for 123111610	tae-r.2 for 123120981	hvu-r.1 for 123394977	ghi-r.1 for 121225308	ghi-r.1 for 107945355	bna-r.1 for 106345840	bna-r.1 for 125594253	bna-r.1 for 106451858	sbi-r.1 for 8062034	sot-r.1 for 102592185	cit-r.1 for 102615212	bdi-r.1 for 100844704	nta-r.1 for 107815486	nta-r.1 for 107763714

Ortholog

Ortholog ID: 9498

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

TOP6B

TOP6B

Function^*

uncharacterized protein

topoisomerase 6 subunit B

DNA topoisomerase 6 subunit B

DNA topoisomerase 6 subunit B-like

DNA topoisomerase 6 subunit B

DNA topoisomerase 6 subunit B-like

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03015	mRNA surveillance pathway	3
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	2
zma03082	ATP-dependent chromatin remodeling	2
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	4
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	3
tae03410	Base excision repair	3
tae03420	Nucleotide excision repair	3
tae03430	Mismatch repair	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	5
tae03015	mRNA surveillance pathway	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	7
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	5
ghi03410	Base excision repair	3
ghi03420	Nucleotide excision repair	3
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	2
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00260	Glycine, serine and threonine metabolism	2
sot00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03083	Polycomb repressive complex	2
bdi03020	RNA polymerase	2
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	3
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

5715184

821626

100809558

101263928

4346606

103632502

103869277

100265632

18097264

11421475

123103413

123111610

123120981

123394977

121225308

107945355

106345840

125594253

106451858

8062034

102592185

102615212

100844704

107815486

107763714

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_01g019750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g019750v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	1	1	1	1	3	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_01g019750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_01g019750v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**