ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_10g442650v5	uncharacterized protein
ath-u.5	AT2G03270	DNA-binding protein
gma-u.5	100810545	DNA-binding protein SMUBP-2
gma-u.5	100801854	DNA-binding protein SMUBP-2
sly-u.5	101249337	uncharacterized LOC101249337
osa-u.5	4333346	uncharacterized LOC4333346
zma-u.5	100280381	uncharacterized LOC100280381
bra-r.6	103839413	DNA-binding protein SMUBP-2
vvi-u.5	100262429	uncharacterized LOC100262429
ppo-u.5	7496151	uncharacterized LOC7496151
mtr-u.5	11413327	DNA-binding protein SMUBP-2
tae-r.2	123123222	DNA-binding protein SMUBP-2
tae-r.2	123113695	DNA-binding protein SMUBP-2
tae-r.2	123105424	DNA-binding protein SMUBP-2
hvu-r.1	123452732	DNA-binding protein SMUBP-2
ghi-r.1	107891290	DNA-binding protein SMUBP-2
ghi-r.1	107889542	DNA-binding protein SMUBP-2
bna-r.1	106437947	DNA-binding protein SMUBP-2-like
bna-r.1	106418340	DNA-binding protein SMUBP-2-like
sbi-r.1	8063003	DNA-binding protein SMUBP-2
sot-r.1	102591799	DNA-binding protein SMUBP-2
cit-r.1	102627247	uncharacterized LOC102627247
bdi-r.1	100844439	DNA-binding protein SMUBP-2
nta-r.1	107767374	uncharacterized LOC107767374
nta-r.1	107792306	uncharacterized LOC107792306

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0043139 [list] [network] 5'-3' DNA helicase activity	(10 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(290 genes)	IEA
GO:0003723 [list] [network] RNA binding	(670 genes)	IEA

Protein

XP_042920218.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 2

(predict for XP_042920218.1)

Subcellular
localization
TargetP

chlo 7, mito 3

(predict for XP_042920218.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_10g442650v5	ath-u.5 for AT2G03270	gma-u.5 for 100810545	gma-u.5 for 100801854	sly-u.5 for 101249337	osa-u.5 for 4333346	zma-u.5 for 100280381	bra-r.6 for 103839413	vvi-u.5 for 100262429	ppo-u.5 for 7496151	mtr-u.5 for 11413327	tae-r.2 for 123123222	tae-r.2 for 123113695	tae-r.2 for 123105424	hvu-r.1 for 123452732	ghi-r.1 for 107891290	ghi-r.1 for 107889542	bna-r.1 for 106437947	bna-r.1 for 106418340	sbi-r.1 for 8063003	sot-r.1 for 102591799	cit-r.1 for 102627247	bdi-r.1 for 100844439	nta-r.1 for 107767374	nta-r.1 for 107792306

Ortholog

Ortholog ID: 9972

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

DNA-binding protein

DNA-binding protein SMUBP-2

uncharacterized LOC101249337

uncharacterized LOC4333346

uncharacterized LOC100280381

DNA-binding protein SMUBP-2

uncharacterized LOC100262429

uncharacterized LOC7496151

DNA-binding protein SMUBP-2

DNA-binding protein SMUBP-2-like

DNA-binding protein SMUBP-2

uncharacterized LOC102627247

DNA-binding protein SMUBP-2

uncharacterized LOC107767374

uncharacterized LOC107792306

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma04517	IgSF CAM signaling	2
gma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03022	Basal transcription factors	2
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00410	beta-Alanine metabolism	2
ghi00640	Propanoate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	3
ghi00540	Lipopolysaccharide biosynthesis	2
ghi00220	Arginine biosynthesis	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4
bna03022	Basal transcription factors	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2
bna00270	Cysteine and methionine metabolism	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00760	Nicotinate and nicotinamide metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2
nta03040	Spliceosome	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5716031

814856

100810545

100801854

101249337

4333346

100280381

103839413

100262429

7496151

11413327

123123222

123113695

123105424

123452732

107891290

107889542

106437947

106418340

8063003

102591799

102627247

100844439

107767374

107792306

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_10g442650v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_10g442650v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_10g442650v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_10g442650v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**