ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_12g509050v5	uncharacterized protein
ath-u.5	PPL1	PsbP-like protein 1
gma-u.5	100789641	psbP-like protein 1, chloroplastic
gma-u.5	100305918	psbP-like protein 1, chloroplastic
sly-u.5	101259227	psbP-like protein 1, chloroplastic
osa-u.5	4345346	psbP-like protein 1, chloroplastic
osa-u.5	4348816	uncharacterized LOC4348816
osa-u.5	9268431	psbP-like protein 1, chloroplastic
zma-u.5	100281199	chloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein
vvi-u.5	PSBP2	putative oxygen evolving enhancer protein
ppo-u.5	7458603	psbP-like protein 1, chloroplastic
mtr-u.5	25497707	psbP-like protein 1, chloroplastic
tae-r.2	123095571	psbP-like protein 1, chloroplastic
tae-r.2	123094128	psbP-like protein 1, chloroplastic
hvu-r.1	123446809	psbP-like protein 1, chloroplastic
ghi-r.1	107960084	psbP-like protein 1, chloroplastic
ghi-r.1	107904111	psbP-like protein 1, chloroplastic
bna-r.1	106367527	psbP-like protein 1, chloroplastic
bna-r.1	106445351	psbP-like protein 1, chloroplastic
bna-r.1	106396201	psbP-like protein 1, chloroplastic
sbi-r.1	8085721	psbP-like protein 1, chloroplastic
sot-r.1	102585358	psbP-like protein 1, chloroplastic
cit-r.1	102629780	psbP-like protein 1, chloroplastic
bdi-r.1	100840391	psbP-like protein 1, chloroplastic
nta-r.1	107786772	psbP-like protein 1, chloroplastic
nta-r.1	107774757	psbP-like protein 1, chloroplastic

Annotation

functional annotation

KEGG

cre00195 [list] [network] Photosynthesis (62 genes)

GO BP

GO:0015979 [list] [network] photosynthesis

(64 genes)

IEA

GO CC

GO:0009654 [list] [network] photosystem II oxygen evolving complex	(13 genes)	IEA
GO:0009523 [list] [network] photosystem II	(19 genes)	IEA
GO:0019898 [list] [network] extrinsic component of membrane	(32 genes)	IEA

GO MF

GO:0005509 [list] [network] calcium ion binding

(171 genes)

IEA

Protein

XP_001691034.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 2

(predict for XP_001691034.1)

Subcellular
localization
TargetP

chlo 7, mito 4

(predict for XP_001691034.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g509050v5	ath-u.5 for PPL1	gma-u.5 for 100789641	gma-u.5 for 100305918	sly-u.5 for 101259227	osa-u.5 for 4345346	osa-u.5 for 4348816	osa-u.5 for 9268431	zma-u.5 for 100281199	vvi-u.5 for PSBP2	ppo-u.5 for 7458603	mtr-u.5 for 25497707	tae-r.2 for 123095571	tae-r.2 for 123094128	hvu-r.1 for 123446809	ghi-r.1 for 107960084	ghi-r.1 for 107904111	bna-r.1 for 106367527	bna-r.1 for 106445351	bna-r.1 for 106396201	sbi-r.1 for 8085721	sot-r.1 for 102585358	cit-r.1 for 102629780	bdi-r.1 for 100840391	nta-r.1 for 107786772	nta-r.1 for 107774757

Ortholog

Ortholog ID: 8055

Species

cre

ath

gma

sly

osa

zma

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

PPL1

PSBP2

Function^*

uncharacterized protein

PsbP-like protein 1

psbP-like protein 1, chloroplastic

uncharacterized LOC4348816

psbP-like protein 1, chloroplastic

chloroplast oxygen-evolving complex/thylakoid lumenal 25.6kDa protein

putative oxygen evolving enhancer protein

psbP-like protein 1, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	4
ath00710	Carbon fixation by Calvin cycle	2
ath00260	Glycine, serine and threonine metabolism	2
ath00630	Glyoxylate and dicarboxylate metabolism	2
ath00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	2
gma00260	Glycine, serine and threonine metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2
gma00670	One carbon pool by folate	2
gma00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	6
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma01240	Biosynthesis of cofactors	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	3
sly00710	Carbon fixation by Calvin cycle	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00710	Carbon fixation by Calvin cycle	3
vvi01200	Carbon metabolism	3
vvi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00710	Carbon fixation by Calvin cycle	6
ppo01200	Carbon metabolism	6
ppo00195	Photosynthesis	4
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	5
mtr00710	Carbon fixation by Calvin cycle	4
mtr00195	Photosynthesis	4
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00196	Photosynthesis - antenna proteins	3
tae00195	Photosynthesis	3
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00740	Riboflavin metabolism	3
tae01240	Biosynthesis of cofactors	3
tae00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	4
tae00196	Photosynthesis - antenna proteins	2
tae00740	Riboflavin metabolism	2
tae00790	Folate biosynthesis	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	7
hvu00710	Carbon fixation by Calvin cycle	4
hvu00195	Photosynthesis	4
hvu00630	Glyoxylate and dicarboxylate metabolism	4
hvu00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00030	Pentose phosphate pathway	2
ghi00051	Fructose and mannose metabolism	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	7
sot01200	Carbon metabolism	4
sot00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	3
cit00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00630	Glyoxylate and dicarboxylate metabolism	7
bdi01200	Carbon metabolism	7
bdi00710	Carbon fixation by Calvin cycle	5
bdi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta00195	Photosynthesis	2
nta00620	Pyruvate metabolism	2
nta00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

5716532

824699

100789641

100305918

101259227

4345346

4348816

9268431

100281199

100259776

7458603

25497707

123095571

123094128

123087420

123446809

107960084

107904111

106367527

106445351

106396201

8085721

102585358

102629780

100840391

107786772

107774757

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_12g509050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g509050v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta	bra
Paralog	1	1	2	1	3	1	1	1	1	2	1	2	3	1	1	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g509050v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g509050v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**