ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_17g702400v5	uncharacterized protein
ath-u.5	AT5G51140	Pseudouridine synthase family protein
gma-u.5	100811500	RNA pseudouridine synthase 7
sly-u.5	101254284	RNA pseudouridine synthase 7
osa-u.5	9269812	RNA pseudouridine synthase 7-like
zma-u.5	100217137	RNA pseudouridine synthase 7
bra-r.6	103857197	RNA pseudouridine synthase 7
bra-r.6	103852163	RNA pseudouridine synthase 7
vvi-u.5	100255954	RNA pseudouridine synthase 7
ppo-u.5	7454741	RNA pseudouridine synthase 7
mtr-u.5	11424387	RNA pseudouridine synthase 7
tae-r.2	123105416	RNA pseudouridine synthase 7
tae-r.2	123113687	RNA pseudouridine synthase 7
tae-r.2	123123215	RNA pseudouridine synthase 7
hvu-r.1	123452724	RNA pseudouridine synthase 7
ghi-r.1	121215504	RNA pseudouridine synthase 7
bna-r.1	125581912	RNA pseudouridine synthase 7-like
bna-r.1	106345873	RNA pseudouridine synthase 7-like
bna-r.1	106387919	RNA pseudouridine synthase 7
sbi-r.1	110435137	RNA pseudouridine synthase 7
sot-r.1	102599479	RNA pseudouridine synthase 7
cit-r.1	102628313	RNA pseudouridine synthase 7
bdi-r.1	100830962	RNA pseudouridine synthase 7
nta-r.1	107789965	RNA pseudouridine synthase 7
nta-r.1	107791949	RNA pseudouridine synthase 7

Annotation

functional annotation

KEGG

GO BP

GO:0001522 [list] [network] pseudouridine synthesis

(29 genes)

IEA

GO CC

GO MF

GO:0009982 [list] [network] pseudouridine synthase activity	(23 genes)	IEA
GO:0003723 [list] [network] RNA binding	(670 genes)	IEA

Protein

XP_001691594.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, plas 1, pero 1, cyto_E.R. 1

(predict for XP_001691594.1)

Subcellular
localization
TargetP

other 9

(predict for XP_001691594.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_17g702400v5	ath-u.5 for AT5G51140	gma-u.5 for 100811500	sly-u.5 for 101254284	osa-u.5 for 9269812	zma-u.5 for 100217137	bra-r.6 for 103857197	bra-r.6 for 103852163	vvi-u.5 for 100255954	ppo-u.5 for 7454741	mtr-u.5 for 11424387	tae-r.2 for 123105416	tae-r.2 for 123113687	tae-r.2 for 123123215	hvu-r.1 for 123452724	ghi-r.1 for 121215504	bna-r.1 for 125581912	bna-r.1 for 106345873	bna-r.1 for 106387919	sbi-r.1 for 110435137	sot-r.1 for 102599479	cit-r.1 for 102628313	bdi-r.1 for 100830962	nta-r.1 for 107789965	nta-r.1 for 107791949

Ortholog

Ortholog ID: 7758

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Pseudouridine synthase family protein

RNA pseudouridine synthase 7

RNA pseudouridine synthase 7-like

RNA pseudouridine synthase 7

RNA pseudouridine synthase 7-like

RNA pseudouridine synthase 7

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	4
bra00061	Fatty acid biosynthesis	2
bra00780	Biotin metabolism	2
bra01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04146	Peroxisome	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00402	Benzoxazinoid biosynthesis	2
tae00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00402	Benzoxazinoid biosynthesis	2
tae00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

5717281

835188

100811500

101254284

9269812

100217137

103857197

103852163

100255954

7454741

11424387

123105416

123113687

123123215

123452724

121215504

107949602

125581912

106345873

106387919

110435137

102599479

102628313

100830962

107789965

107791949

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_17g702400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g702400v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	2	1	1	1	3	1	1	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_17g702400v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_17g702400v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**