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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7454741   RNA pseudouridine synthase 7 
 ppo-r.4   7454741   RNA pseudouridine synthase 7 
 ppo-m.4   7454741   RNA pseudouridine synthase 7 
 gma-u.5   100811500   RNA pseudouridine synthase 7 
 mtr-u.5   11424387   RNA pseudouridine synthase 7 
 ath-u.5   AT5G51140   Pseudouridine synthase family protein 
 vvi-u.5   100255954   RNA pseudouridine synthase 7 
 sly-u.5   101254284   RNA pseudouridine synthase 7 
 osa-u.5   9269812   RNA pseudouridine synthase 7-like 
 zma-u.5   100217137   RNA pseudouridine synthase 7 

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Top 50 coexpressed genes to 7454741 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454741 (ppo-u.5 coexpression data)

CoexMap"7454741"


ppoLOC7454741 | Entrez gene ID : 7454741    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (28 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_052303658.1 [sequence] [blastp]
XP_052303659.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  nucl 1  (predict for XP_052303658.1)
cyto 8,  nucl 1,  cysk 1,  cysk_nucl 1,  E.R._vacu 1  (predict for XP_052303659.1)
Subcellular
localization
TargetP
other 9  (predict for XP_052303658.1)
mito 4,  other 3,  scret 3  (predict for XP_052303659.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7454741

.
ppo-r.4
for
7454741

.
ppo-m.4
for
7454741

.
gma-u.5
for
100811500

.
mtr-u.5
for
11424387

.
ath-u.5
for
AT5G51140

.
vvi-u.5
for
100255954

.
sly-u.5
for
101254284

.
osa-u.5
for
9269812

.
zma-u.5
for
100217137

.


Ortholog ID: 7758
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G51140 LOC100811500 LOC101254284 LOC9269812 LOC100217137 LOC103857197 LOC103852163 LOC100255954 LOC7454741 LOC11424387 LOC123123215 LOC123105416 LOC123452724 LOC121215504 LOC125581912 LOC106345873 CHLRE_17g702400v5 LOC110435137 LOC102599479 LOC102628313 LOC100830962 LOC107791949 LOC107789965
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7-like RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7-like RNA pseudouridine synthase 7-like uncharacterized protein RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7 RNA pseudouridine synthase 7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00061 Fatty acid biosynthesis 2
bra00780 Biotin metabolism 2
bra01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04146 Peroxisome 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00402 Benzoxazinoid biosynthesis 2
tae00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00860 Porphyrin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835188 100811500 101254284 9269812 100217137 103857197 103852163 100255954 7454741 11424387 123123215 123105416 123452724 121215504 125581912 106345873 5717281 110435137 102599479 102628313 100830962 107791949 107789965
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