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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g207950v5   uncharacterized protein 
 ath-u.5   AT2G34750   RNA polymerase I specific transcription initiation factor RRN3 protein 
 ath-u.5   AT1G30590   RNA polymerase I specific transcription initiation factor RRN3 protein 
 gma-u.5   100812298   RNA polymerase I-specific transcription initiation factor RRN3 
 gma-u.5   100814416   RNA polymerase I-specific transcription initiation factor RRN3 
 sly-u.5   101266087   uncharacterized LOC101266087 
 osa-u.5   4341897   uncharacterized LOC4341897 
 zma-u.5   100272544   RNA polymerase I specific transcription initiation factor RRN3 protein 
 bra-r.6   103857546   RNA polymerase I-specific transcription initiation factor RRN3 
 bra-r.6   103865352   RNA polymerase I-specific transcription initiation factor RRN3 
 bra-r.6   103867422   RNA polymerase I-specific transcription initiation factor RRN3 
 vvi-u.5   100248167   uncharacterized LOC100248167 
 vvi-u.5   100248166   RNA polymerase I-specific transcription initiation factor rrn3 
 ppo-u.5   7480445   uncharacterized LOC7480445 
 mtr-u.5   25494034   RNA polymerase I-specific transcription initiation factor RRN3 
 tae-r.2   123127205   RNA polymerase I-specific transcription initiation factor RRN3 
 tae-r.2   123144290   RNA polymerase I-specific transcription initiation factor RRN3 
 hvu-r.1   123413502   RNA polymerase I-specific transcription initiation factor RRN3 
 ghi-r.1   107949552   RNA polymerase I-specific transcription initiation factor RRN3 
 ghi-r.1   107951635   RNA polymerase I-specific transcription initiation factor RRN3 
 bna-r.1   106392368   RNA polymerase I-specific transcription initiation factor RRN3 
 bna-r.1   106447287   RNA polymerase I-specific transcription initiation factor RRN3-like 
 bna-r.1   106371901   RNA polymerase I-specific transcription initiation factor rrn3 
 sbi-r.1   8065105   RNA polymerase I-specific transcription initiation factor RRN3 
 sot-r.1   102602356   RNA polymerase I-specific transcription initiation factor RRN3 
 cit-r.1   102627181   uncharacterized LOC102627181 
 cit-r.1   102625469   uncharacterized LOC102625469 
 bdi-r.1   100827862   RNA polymerase I-specific transcription initiation factor RRN3 
 nta-r.1   107781665   uncharacterized LOC107781665 
 nta-r.1   107772905   uncharacterized LOC107772905 
 nta-r.1   107816212   uncharacterized LOC107816212 

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Top 50 coexpressed genes to CHLRE_03g207950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g207950v5 (cre-r.1 coexpression data)

CoexMap"5718811"


creCHLRE_03g207950v5 | Entrez gene ID : 5718811    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 1 3 2 1 1 2 1 2 3 1 1 2 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006361 [list] [network] transcription initiation at RNA polymerase I promoter  (3 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0001042 [list] [network] RNA polymerase I core binding  (1 genes)  IEA  
GO:0001181 [list] [network] RNA polymerase I general transcription initiation factor activity  (1 genes)  IEA  
Protein XP_001693306.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3,  cysk_nucl 3  (predict for XP_001693306.2)
Subcellular
localization
TargetP
other 7  (predict for XP_001693306.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g207950v5
ath-u.5
for
AT2G34750
ath-u.5
for
AT1G30590
gma-u.5
for
100812298
gma-u.5
for
100814416
sly-u.5
for
101266087
osa-u.5
for
4341897
zma-u.5
for
100272544
bra-r.6
for
103857546
bra-r.6
for
103865352
bra-r.6
for
103867422
vvi-u.5
for
100248167
vvi-u.5
for
100248166
ppo-u.5
for
7480445
mtr-u.5
for
25494034
tae-r.2
for
123127205
tae-r.2
for
123144290
hvu-r.1
for
123413502
ghi-r.1
for
107949552
ghi-r.1
for
107951635
bna-r.1
for
106392368
bna-r.1
for
106447287
bna-r.1
for
106371901
sbi-r.1
for
8065105
sot-r.1
for
102602356
cit-r.1
for
102627181
cit-r.1
for
102625469
bdi-r.1
for
100827862
nta-r.1
for
107781665
nta-r.1
for
107772905
nta-r.1
for
107816212


Ortholog ID: 4357
Species cre ath ath gma gma sly osa zma bra bra bra vvi vvi ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit cit bdi nta nta nta
Symbol CHLRE_03g207950v5 AT2G34750 AT1G30590 LOC100812298 LOC100814416 LOC101266087 LOC4341897 LOC100272544 LOC103857546 LOC103865352 LOC103867422 LOC100248167 LOC100248166 LOC7480445 LOC25494034 LOC123136804 LOC123148863 LOC123163919 LOC123413502 LOC107949552 LOC107951635 LOC106392368 LOC106371901 LOC111213843 LOC8065105 LOC102602356 LOC102627181 LOC102625469 LOC100827862 LOC107781665 LOC107772905 LOC107816212
Function* uncharacterized protein RNA polymerase I specific transcription initiation factor RRN3 protein RNA polymerase I specific transcription initiation factor RRN3 protein RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC101266087 uncharacterized LOC4341897 RNA polymerase I specific transcription initiation factor RRN3 protein RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC100248167 RNA polymerase I-specific transcription initiation factor rrn3 uncharacterized LOC7480445 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor rrn3 RNA polymerase I-specific transcription initiation factor rrn3-like RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC102627181 uncharacterized LOC102625469 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC107781665 uncharacterized LOC107772905 uncharacterized LOC107816212
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 9
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta00230 Purine metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718811 818040 839939 100812298 100814416 101266087 4341897 100272544 103857546 103865352 103867422 100248167 100248166 7480445 25494034 123136804 123148863 123163919 123413502 107949552 107951635 106392368 106371901 111213843 8065105 102602356 102627181 102625469 100827862 107781665 107772905 107816212
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