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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106392368   RNA polymerase I-specific transcription initiation factor RRN3 
 ath-u.5   AT2G34750   RNA polymerase I specific transcription initiation factor RRN3 protein 
 ath-u.5   AT1G30590   RNA polymerase I specific transcription initiation factor RRN3 protein 
 gma-u.5   100814416   RNA polymerase I-specific transcription initiation factor RRN3 
 gma-u.5   100812298   RNA polymerase I-specific transcription initiation factor RRN3 
 vvi-u.5   100248166   RNA polymerase I-specific transcription initiation factor rrn3 
 vvi-u.5   100248167   uncharacterized LOC100248167 
 ppo-u.5   7480445   uncharacterized LOC7480445 
 mtr-u.5   25494034   RNA polymerase I-specific transcription initiation factor RRN3 
 sly-u.5   101266087   uncharacterized LOC101266087 
 osa-u.5   4341897   uncharacterized LOC4341897 
 zma-u.5   100272544   RNA polymerase I specific transcription initiation factor RRN3 protein 

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Top 50 coexpressed genes to 106392368 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106392368 (bna-r.1 coexpression data)

CoexMap"106392368"


bnaLOC106392368 | Entrez gene ID : 106392368    
Species bna ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre nta bdi bra
Paralog 1 2 2 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006361 [list] [network] transcription initiation at RNA polymerase I promoter  (14 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0001042 [list] [network] RNA polymerase I core binding  (9 genes)  IEA  
GO:0001181 [list] [network] RNA polymerase I general transcription initiation factor activity  (9 genes)  IEA  
Protein XP_013688644.1 [sequence] [blastp]
XP_013688645.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_013688644.1)
chlo 3,  nucl 2,  plas 2,  cysk_nucl 1,  cyto 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_013688645.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_013688644.1)
other 9  (predict for XP_013688645.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106392368

.
ath-u.5
for
AT2G34750

.
ath-u.5
for
AT1G30590

.
gma-u.5
for
100814416

.
gma-u.5
for
100812298

.
vvi-u.5
for
100248166

.
vvi-u.5
for
100248167

.
ppo-u.5
for
7480445

.
mtr-u.5
for
25494034

.
sly-u.5
for
101266087

.
osa-u.5
for
4341897

.
zma-u.5
for
100272544

.


Ortholog ID: 4357
Species ath gma gma sly osa zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT1G30590 LOC100812298 LOC100814416 LOC101266087 LOC4341897 LOC100272544 LOC103865352 LOC103867422 LOC100248166 LOC100248167 LOC7480445 LOC25494034 LOC123163919 LOC123136804 LOC123413502 LOC107951635 LOC107949552 LOC111213843 LOC106392368 CHLRE_03g207950v5 LOC8065105 LOC102602356 LOC102627181 LOC102625469 LOC100827862 LOC107816212 LOC107781665
Function* RNA polymerase I specific transcription initiation factor RRN3 protein RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC101266087 uncharacterized LOC4341897 RNA polymerase I specific transcription initiation factor RRN3 protein RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor rrn3 uncharacterized LOC100248167 uncharacterized LOC7480445 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor rrn3-like RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized protein RNA polymerase I-specific transcription initiation factor RRN3 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC102627181 uncharacterized LOC102625469 RNA polymerase I-specific transcription initiation factor RRN3 uncharacterized LOC107816212 uncharacterized LOC107781665
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 6
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00340 Histidine metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 9
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta00230 Purine metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839939 100812298 100814416 101266087 4341897 100272544 103865352 103867422 100248166 100248167 7480445 25494034 123163919 123136804 123413502 107951635 107949552 111213843 106392368 5718811 8065105 102602356 102627181 102625469 100827862 107816212 107781665
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