ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_12g553750v5	uncharacterized protein
cre-r.1	CHLRE_09g386731v5	uncharacterized protein
ath-u.5	AT5G51300	splicing factor-like protein
gma-u.5	100818518	splicing factor-like protein 1
gma-u.5	100800982	splicing factor-like protein 1
sly-u.5	101266106	splicing factor-like protein 1
sly-u.5	101254207	RNA-binding motif-containing protein
sly-u.5	101245847	splicing factor-like protein 1
osa-u.5	9268114	splicing factor-like protein 1
zma-u.5	100383202	splicing factor-related
zma-u.5	103646582	splicing factor-like protein 1
bra-r.6	103857190	splicing factor-like protein 1
vvi-u.5	100267539	splicing factor-like protein 1
ppo-u.5	18094025	splicing factor-like protein 1
ppo-u.5	7465495	splicing factor-like protein 1
mtr-u.5	25491878	splicing factor-like protein 1
tae-r.2	123045297	splicing factor-like protein 1
tae-r.2	123053136	splicing factor-like protein 1
tae-r.2	123189044	splicing factor-like protein 1
hvu-r.1	123426531	splicing factor-like protein 1
ghi-r.1	107939826	splicing factor-like protein 1
ghi-r.1	107931452	splicing factor-like protein 1
bna-r.1	106345878	splicing factor-like protein 1
bna-r.1	106387925	splicing factor-like protein 1
sbi-r.1	8057605	branchpoint-bridging protein
sbi-r.1	8081444	branchpoint-bridging protein
sot-r.1	102602752	branchpoint-bridging protein-like
sot-r.1	102591493	branchpoint-bridging protein-like
sot-r.1	102591164	branchpoint-bridging protein-like
cit-r.1	102615366	splicing factor-like protein 1
bdi-r.1	100833136	splicing factor-like protein 1
nta-r.1	107830863	splicing factor-like protein 1
nta-r.1	107785240	splicing factor-like protein 1
nta-r.1	107778813	splicing factor-like protein 1

Top 50 coexpressed genes to CHLRE_12g553750v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_12g553750v5 (cre-r.1 coexpression data)

CoexMap"5719707"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome

(13 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(1576 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(109 genes)

IEA

Protein

XP_001694028.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_001694028.2)

Subcellular
localization
TargetP

other 7, chlo 3

(predict for XP_001694028.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_12g553750v5	cre-r.1 for CHLRE_09g386731v5	ath-u.5 for AT5G51300	gma-u.5 for 100818518	gma-u.5 for 100800982	sly-u.5 for 101266106	sly-u.5 for 101254207	sly-u.5 for 101245847	osa-u.5 for 9268114	zma-u.5 for 100383202	zma-u.5 for 103646582	bra-r.6 for 103857190	vvi-u.5 for 100267539	ppo-u.5 for 18094025	ppo-u.5 for 7465495	mtr-u.5 for 25491878	tae-r.2 for 123045297	tae-r.2 for 123053136	tae-r.2 for 123189044	hvu-r.1 for 123426531	ghi-r.1 for 107939826	ghi-r.1 for 107931452	bna-r.1 for 106345878	bna-r.1 for 106387925	sbi-r.1 for 8057605	sbi-r.1 for 8081444	sot-r.1 for 102602752	sot-r.1 for 102591493	sot-r.1 for 102591164	cit-r.1 for 102615366	bdi-r.1 for 100833136	nta-r.1 for 107830863	nta-r.1 for 107785240	nta-r.1 for 107778813

Ortholog

Ortholog ID: 6102

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

splicing factor-like protein

splicing factor-like protein 1

RNA-binding motif-containing protein

splicing factor-like protein 1

splicing factor-related

splicing factor-like protein 1

branchpoint-bridging protein

branchpoint-bridging protein-like

splicing factor-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	4
cre04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath03013	Nucleocytoplasmic transport	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03250	Viral life cycle - HIV-1	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta00052	Galactose metabolism	2
nta00511	Other glycan degradation	2
nta00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

5719707

5720836

835204

100818518

100800982

101266106

101254207

101245847

9268114

100383202

103646582

103857190

100267539

18094025

7465495

25491878

123045297

123053136

123189044

123426531

107939826

107931452

106345878

106387925

8057605

8081444

102602752

102591493

102591164

102615366

100833136

107830863

107785240

107809458

The preparation time of this page was 0.5 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	2	1	2	3	1	2	1	1	2	1	3	1	2	2	2	3	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_12g553750v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_12g553750v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**