ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107830863	splicing factor-like protein 1
nta-r.1	107809458	splicing factor-like protein 1
nta-r.1	107778813	splicing factor-like protein 1
nta-r.1	107785240	splicing factor-like protein 1
sly-u.5	101254207	RNA-binding motif-containing protein
sly-u.5	101245847	splicing factor-like protein 1
sly-u.5	101266106	splicing factor-like protein 1
sot-r.1	102591493	branchpoint-bridging protein-like
sot-r.1	102591164	branchpoint-bridging protein-like
sot-r.1	102602752	branchpoint-bridging protein-like
ath-u.5	AT5G51300	splicing factor-like protein
gma-u.5	100818518	splicing factor-like protein 1
gma-u.5	100800982	splicing factor-like protein 1
bra-r.6	103857190	splicing factor-like protein 1
vvi-u.5	100267539	splicing factor-like protein 1
ppo-u.5	18094025	splicing factor-like protein 1
ppo-u.5	7465495	splicing factor-like protein 1
mtr-u.5	25491878	splicing factor-like protein 1
ghi-r.1	107939826	splicing factor-like protein 1
ghi-r.1	107931452	splicing factor-like protein 1
bna-r.1	106345878	splicing factor-like protein 1
bna-r.1	106387925	splicing factor-like protein 1
cit-r.1	102615366	splicing factor-like protein 1
osa-u.5	9268114	splicing factor-like protein 1
zma-u.5	100383202	splicing factor-related
zma-u.5	103646582	splicing factor-like protein 1
tae-r.2	123053136	splicing factor-like protein 1
tae-r.2	123189044	splicing factor-like protein 1
tae-r.2	123045297	splicing factor-like protein 1
hvu-r.1	123426531	splicing factor-like protein 1
sbi-r.1	8057605	branchpoint-bridging protein
sbi-r.1	8081444	branchpoint-bridging protein
bdi-r.1	100833136	splicing factor-like protein 1
cre-r.1	CHLRE_12g553750v5	uncharacterized protein
cre-r.1	CHLRE_09g386731v5	uncharacterized protein

Top 50 coexpressed genes to 107830863 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107830863 (nta-r.1 coexpression data)

CoexMap"107830863"

[Cytoscape]

Annotation

functional annotation

KEGG

nta03040 [list] [network] Spliceosome (402 genes)

GO BP

GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome

(36 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4980 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding	(573 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(2210 genes)	IEA

Protein

XP_016514020.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_016514020.2)

Subcellular
localization
TargetP

other 8

(predict for XP_016514020.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107830863	nta-r.1 for 107809458	nta-r.1 for 107778813	nta-r.1 for 107785240	sly-u.5 for 101254207	sly-u.5 for 101245847	sly-u.5 for 101266106	sot-r.1 for 102591493	sot-r.1 for 102591164	sot-r.1 for 102602752	ath-u.5 for AT5G51300	gma-u.5 for 100818518	gma-u.5 for 100800982	bra-r.6 for 103857190	vvi-u.5 for 100267539	ppo-u.5 for 18094025	ppo-u.5 for 7465495	mtr-u.5 for 25491878	ghi-r.1 for 107939826	ghi-r.1 for 107931452	bna-r.1 for 106345878	bna-r.1 for 106387925	cit-r.1 for 102615366	osa-u.5 for 9268114	zma-u.5 for 100383202	zma-u.5 for 103646582	tae-r.2 for 123053136	tae-r.2 for 123189044	tae-r.2 for 123045297	hvu-r.1 for 123426531	sbi-r.1 for 8057605	sbi-r.1 for 8081444	bdi-r.1 for 100833136	cre-r.1 for CHLRE_12g553750v5	cre-r.1 for CHLRE_09g386731v5

Ortholog

Ortholog ID: 6102

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*