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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g145300v5   uncharacterized protein 
 ath-u.5   AT1G73820   Ssu72-like family protein 
 gma-u.5   100306388   uncharacterized LOC100306388 
 sly-u.5   101248465   uncharacterized LOC101248465 
 osa-u.5   4351607   uncharacterized LOC4351607 
 zma-u.5   100273452   uncharacterized LOC100273452 
 bra-r.6   103830729   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 vvi-u.5   100256509   uncharacterized LOC100256509 
 ppo-u.5   7474830   uncharacterized LOC7474830 
 mtr-u.5   25480900   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 tae-r.2   123120078   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 tae-r.2   123111043   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 tae-r.2   123102828   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 hvu-r.1   123396352   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 ghi-r.1   107904346   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 ghi-r.1   107904205   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 bna-r.1   106430134   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 bna-r.1   111210033   RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like 
 sbi-r.1   8076270   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 sot-r.1   102600661   RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like 
 cit-r.1   102628888   uncharacterized LOC102628888 
 bdi-r.1   100829441   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 nta-r.1   107822792   uncharacterized LOC107822792 
 nta-r.1   107786850   uncharacterized LOC107786850 

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Top 50 coexpressed genes to CHLRE_02g145300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g145300v5 (cre-r.1 coexpression data)

CoexMap"5720500"


creCHLRE_02g145300v5 | Entrez gene ID : 5720500      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03015 [list] [network] mRNA surveillance pathway (40 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (2 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (14 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (5 genes)  IEA  
Protein XP_042927734.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  nucl 1,  mito 1,  extr 1,  cysk 1,  cyto_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_042927734.1)
Subcellular
localization
TargetP
other 8  (predict for XP_042927734.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g145300v5
ath-u.5
for
AT1G73820
gma-u.5
for
100306388
sly-u.5
for
101248465
osa-u.5
for
4351607
zma-u.5
for
100273452
bra-r.6
for
103830729
vvi-u.5
for
100256509
ppo-u.5
for
7474830
mtr-u.5
for
25480900
tae-r.2
for
123120078
tae-r.2
for
123111043
tae-r.2
for
123102828
hvu-r.1
for
123396352
ghi-r.1
for
107904346
ghi-r.1
for
107904205
bna-r.1
for
106430134
bna-r.1
for
111210033
sbi-r.1
for
8076270
sot-r.1
for
102600661
cit-r.1
for
102628888
bdi-r.1
for
100829441
nta-r.1
for
107822792
nta-r.1
for
107786850


Ortholog ID: 11129
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_02g145300v5 AT1G73820 LOC100306388 LOC101248465 LOC4351607 LOC100273452 LOC103830729 LOC100256509 LOC7474830 LOC25480900 LOC123120078 LOC123111043 LOC123102828 LOC123396352 LOC107904346 LOC107904205 LOC106430134 LOC111210033 LOC8076270 LOC102600661 LOC102628888 LOC100829441 LOC107822792 LOC107786850
Function* uncharacterized protein Ssu72-like family protein uncharacterized LOC100306388 uncharacterized LOC101248465 uncharacterized LOC4351607 uncharacterized LOC100273452 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized LOC100256509 uncharacterized LOC7474830 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like uncharacterized LOC102628888 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized LOC107822792 uncharacterized LOC107786850
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 2
cre00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04070 Phosphatidylinositol signaling system 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae03015 mRNA surveillance pathway 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae03050 Proteasome 5
tae03015 mRNA surveillance pathway 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna03022 Basal transcription factors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5720500 843718 100306388 101248465 4351607 100273452 103830729 100256509 7474830 25480900 123120078 123111043 123102828 123396352 107904346 107904205 106430134 111210033 8076270 102600661 102628888 100829441 107822792 107786850
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