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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107904346   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 ghi-r.1   107904205   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 ath-u.5   AT1G73820   Ssu72-like family protein 
 bra-r.6   103830729   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 bna-r.1   106430134   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 bna-r.1   111210033   RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like 
 cit-r.1   102628888   uncharacterized LOC102628888 
 gma-u.5   100306388   uncharacterized LOC100306388 
 vvi-u.5   100256509   uncharacterized LOC100256509 
 ppo-u.5   7474830   uncharacterized LOC7474830 
 mtr-u.5   25480900   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 sly-u.5   101248465   uncharacterized LOC101248465 
 sot-r.1   102600661   RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like 
 nta-r.1   107822792   uncharacterized LOC107822792 
 nta-r.1   107786850   uncharacterized LOC107786850 
 osa-u.5   4351607   uncharacterized LOC4351607 
 zma-u.5   100273452   uncharacterized LOC100273452 
 tae-r.2   123111043   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 tae-r.2   123102828   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 tae-r.2   123120078   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 hvu-r.1   123396352   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 sbi-r.1   8076270   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 bdi-r.1   100829441   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 cre-r.1   CHLRE_02g145300v5   uncharacterized protein 

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Top 50 coexpressed genes to 107904346 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107904346 (ghi-r.1 coexpression data)

CoexMap"107904346"


ghiLOC107904346 | Entrez gene ID : 107904346    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03015 [list] [network] mRNA surveillance pathway (365 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (14 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (17 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (14 genes)  IEA  
Protein XP_016686174.1 [sequence] [blastp]
XP_016686175.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 2,  chlo_mito 2  (predict for XP_016686174.1)
nucl 6,  chlo 2,  mito 2,  chlo_mito 2  (predict for XP_016686175.1)
Subcellular
localization
TargetP
mito 7,  other 4  (predict for XP_016686174.1)
mito 7,  other 4  (predict for XP_016686175.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107904346
ghi-r.1
for
107904205
ath-u.5
for
AT1G73820
bra-r.6
for
103830729
bna-r.1
for
106430134
bna-r.1
for
111210033
cit-r.1
for
102628888
gma-u.5
for
100306388
vvi-u.5
for
100256509
ppo-u.5
for
7474830
mtr-u.5
for
25480900
sly-u.5
for
101248465
sot-r.1
for
102600661
nta-r.1
for
107822792
nta-r.1
for
107786850
osa-u.5
for
4351607
zma-u.5
for
100273452
tae-r.2
for
123111043
tae-r.2
for
123102828
tae-r.2
for
123120078
hvu-r.1
for
123396352
sbi-r.1
for
8076270
bdi-r.1
for
100829441
cre-r.1
for
CHLRE_02g145300v5


Ortholog ID: 11129
Species ghi ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107904346 LOC107904205 AT1G73820 LOC103830729 LOC106430134 LOC111210033 LOC102628888 LOC100306388 LOC100256509 LOC7474830 LOC25480900 LOC101248465 LOC102600661 LOC107822792 LOC107786850 LOC4351607 LOC100273452 LOC123111043 LOC123102828 LOC123120078 LOC123396352 LOC8076270 LOC100829441 CHLRE_02g145300v5
Function* RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 Ssu72-like family protein RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like uncharacterized LOC102628888 uncharacterized LOC100306388 uncharacterized LOC100256509 uncharacterized LOC7474830 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized LOC101248465 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like uncharacterized LOC107822792 uncharacterized LOC107786850 uncharacterized LOC4351607 uncharacterized LOC100273452 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna03022 Basal transcription factors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04070 Phosphatidylinositol signaling system 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae03050 Proteasome 5
tae03015 mRNA surveillance pathway 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae03015 mRNA surveillance pathway 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 2
cre00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107904346 107904205 843718 103830729 106430134 111210033 102628888 100306388 100256509 7474830 25480900 101248465 102600661 107822792 107786850 4351607 100273452 123111043 123102828 123120078 123396352 8076270 100829441 5720500
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