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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103830729   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 ath-u.5   AT1G73820   Ssu72-like family protein 
 gma-u.5   100306388   uncharacterized LOC100306388 
 vvi-u.5   100256509   uncharacterized LOC100256509 
 ppo-u.5   7474830   uncharacterized LOC7474830 
 mtr-u.5   25480900   RNA polymerase II subunit A C-terminal domain phosphatase SSU72 
 sly-u.5   101248465   uncharacterized LOC101248465 
 osa-u.5   4351607   uncharacterized LOC4351607 
 zma-u.5   100273452   uncharacterized LOC100273452 

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Top 50 coexpressed genes to 103830729 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103830729 (bra-r.6 coexpression data)

CoexMap"103830729"


braLOC103830729 | Entrez gene ID : 103830729    
Species bra ath gma vvi ppo mtr sly osa zma bdi hvu cit bna sbi ghi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03015 [list] [network] mRNA surveillance pathway (205 genes)
GO BP
GO:0006369 [list] [network] termination of RNA polymerase II transcription  (7 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (12 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity  (18 genes)  IEA  
Protein XP_009104792.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 2,  cyto_mito 2,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_009104792.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_009104792.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103830729
ath-u.5
for
AT1G73820
gma-u.5
for
100306388
vvi-u.5
for
100256509
ppo-u.5
for
7474830
mtr-u.5
for
25480900
sly-u.5
for
101248465
osa-u.5
for
4351607
zma-u.5
for
100273452


Ortholog ID: 11129
Species bra bna bna ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC103830729 LOC111210033 LOC106430134 AT1G73820 LOC107904346 LOC107904205 LOC102628888 LOC100306388 LOC100256509 LOC7474830 LOC25480900 LOC101248465 LOC102600661 LOC107786850 LOC107822792 LOC4351607 LOC100273452 LOC123102828 LOC123111043 LOC123396352 LOC8076270 LOC100829441 CHLRE_02g145300v5
Function* RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like RNA polymerase II subunit A C-terminal domain phosphatase SSU72 Ssu72-like family protein RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized LOC102628888 uncharacterized LOC100306388 uncharacterized LOC100256509 uncharacterized LOC7474830 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized LOC101248465 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like uncharacterized LOC107786850 uncharacterized LOC107822792 uncharacterized LOC4351607 uncharacterized LOC100273452 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna03022 Basal transcription factors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi04120 Ubiquitin mediated proteolysis 5
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04070 Phosphatidylinositol signaling system 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 6
tae03050 Proteasome 5
tae03015 mRNA surveillance pathway 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 2
cre00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103830729 111210033 106430134 843718 107904346 107904205 102628888 100306388 100256509 7474830 25480900 101248465 102600661 107786850 107822792 4351607 100273452 123102828 123111043 123396352 8076270 100829441 5720500
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