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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g674950v5   uncharacterized protein 
 cre-r.1   CHLRE_09g407200v5   uncharacterized protein 
 ath-u.5   AT1G57770   FAD/NAD(P)-binding oxidoreductase family protein 
 gma-u.5   100810986   prolycopene isomerase, chloroplastic 
 sly-u.5   CRTISO-L1   carotenoid isomerase 
 osa-u.5   4334739   prolycopene isomerase, chloroplastic 
 zma-u.5   100281491   carotenoid isomerase 1 
 bra-r.6   103838658   prolycopene isomerase 1, chloroplastic 
 vvi-u.5   100262553   prolycopene isomerase, chloroplastic 
 ppo-u.5   18111148   prolycopene isomerase, chloroplastic 
 mtr-u.5   25494380   prolycopene isomerase, chloroplastic 
 tae-r.2   123087679   prolycopene isomerase, chloroplastic 
 tae-r.2   123114258   prolycopene isomerase, chloroplastic-like 
 tae-r.2   123068863   prolycopene isomerase, chloroplastic 
 hvu-r.1   123395020   prolycopene isomerase 1, chloroplastic 
 ghi-r.1   107920901   prolycopene isomerase, chloroplastic 
 ghi-r.1   107925337   prolycopene isomerase, chloroplastic 
 bna-r.1   106396155   prolycopene isomerase, chloroplastic-like 
 bna-r.1   106434256   prolycopene isomerase 1, chloroplastic 
 sbi-r.1   8080169   prolycopene isomerase 1, chloroplastic 
 sot-r.1   102596427   prolycopene isomerase 1, chloroplastic 
 cit-r.1   102625319   prolycopene isomerase, chloroplastic 
 bdi-r.1   100838735   prolycopene isomerase, chloroplastic 
 nta-r.1   107805441   prolycopene isomerase, chloroplastic-like 
 nta-r.1   107787313   prolycopene isomerase 1, chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_16g674950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g674950v5 (cre-r.1 coexpression data)

CoexMap"5721453"


creCHLRE_16g674950v5 | Entrez gene ID : 5721453      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 2 1 1 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016116 [list] [network] carotenoid metabolic process  (14 genes)  IEA  
GO CC
GO MF
GO:0016491 [list] [network] oxidoreductase activity  (596 genes)  IEA  
Protein XP_001695939.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  E.R. 1,  golg 1  (predict for XP_001695939.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_001695939.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g674950v5
cre-r.1
for
CHLRE_09g407200v5
ath-u.5
for
AT1G57770
gma-u.5
for
100810986
sly-u.5
for
CRTISO-L1
osa-u.5
for
4334739
zma-u.5
for
100281491
bra-r.6
for
103838658
vvi-u.5
for
100262553
ppo-u.5
for
18111148
mtr-u.5
for
25494380
tae-r.2
for
123087679
tae-r.2
for
123114258
tae-r.2
for
123068863
hvu-r.1
for
123395020
ghi-r.1
for
107920901
ghi-r.1
for
107925337
bna-r.1
for
106396155
bna-r.1
for
106434256
sbi-r.1
for
8080169
sot-r.1
for
102596427
cit-r.1
for
102625319
bdi-r.1
for
100838735
nta-r.1
for
107805441
nta-r.1
for
107787313


Ortholog ID: 9267
Species cre cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_16g674950v5 CHLRE_09g407200v5 AT1G57770 LOC100810986 CRTISO-L1 LOC4334739 LOC100281491 LOC103838658 LOC100262553 LOC18111148 LOC25494380 LOC123087679 LOC123114258 LOC123123744 LOC123395020 LOC107920901 LOC107925337 LOC106396155 LOC106434256 LOC8080169 LOC102596427 LOC102625319 LOC100838735 LOC107805441 LOC107787313
Function* uncharacterized protein uncharacterized protein FAD/NAD(P)-binding oxidoreductase family protein prolycopene isomerase, chloroplastic carotenoid isomerase prolycopene isomerase, chloroplastic carotenoid isomerase 1 prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase 1, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase 1, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00052 Galactose metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 6
ppo01200 Carbon metabolism 6
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 7
ghi00053 Ascorbate and aldarate metabolism 6
ghi01200 Carbon metabolism 5
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 7
ghi00053 Ascorbate and aldarate metabolism 6
ghi01200 Carbon metabolism 5
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5721453 5723233 842152 100810986 101247017 4334739 100281491 103838658 100262553 18111148 25494380 123087679 123114258 123123744 123395020 107920901 107925337 106396155 106434256 8080169 102596427 102625319 100838735 107805441 107787313
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