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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100262553   prolycopene isomerase, chloroplastic 
 vvi-r.5   100262553   prolycopene isomerase, chloroplastic 
 vvi-m.5   100262553   prolycopene isomerase, chloroplastic 
 ath-u.5   AT1G57770   FAD/NAD(P)-binding oxidoreductase family protein 
 gma-u.5   100810986   prolycopene isomerase, chloroplastic 
 ppo-u.5   18111148   prolycopene isomerase, chloroplastic 
 mtr-u.5   25494380   prolycopene isomerase, chloroplastic 
 sly-u.5   CRTISO-L1   carotenoid isomerase 
 osa-u.5   4334739   prolycopene isomerase, chloroplastic 
 zma-u.5   100281491   carotenoid isomerase 1 

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Top 50 coexpressed genes to 100262553 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100262553 (vvi-u.5 coexpression data)

CoexMap"100262553"


vviLOC100262553 | Entrez gene ID : 100262553      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016116 [list] [network] carotenoid metabolic process  (17 genes)  IEA  
GO CC
GO MF
GO:0016491 [list] [network] oxidoreductase activity  (1452 genes)  IEA  
Protein XP_010657970.1 [sequence] [blastp]
XP_010657971.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  vacu 1,  nucl 1,  mito 1,  plas 1,  golg 1,  nucl_plas 1,  golg_plas 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_010657970.1)
cyto 4,  E.R. 2,  cyto_nucl 2,  E.R._plas 2  (predict for XP_010657971.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_010657970.1)
other 6,  scret 3  (predict for XP_010657971.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100262553
vvi-r.5
for
100262553
vvi-m.5
for
100262553
ath-u.5
for
AT1G57770
gma-u.5
for
100810986
ppo-u.5
for
18111148
mtr-u.5
for
25494380
sly-u.5
for
CRTISO-L1
osa-u.5
for
4334739
zma-u.5
for
100281491


Ortholog ID: 9267
Species vvi ath gma bra ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi cre cre
Symbol LOC100262553 AT1G57770 LOC100810986 LOC103838658 LOC18111148 LOC25494380 LOC107920901 LOC107925337 LOC106434256 LOC106396155 LOC102625319 CRTISO-L1 LOC102596427 LOC107805441 LOC107787313 LOC4334739 LOC100281491 LOC123114258 LOC123123744 LOC123395020 LOC8080169 LOC100838735 CHLRE_09g407200v5 CHLRE_16g674950v5
Function* prolycopene isomerase, chloroplastic FAD/NAD(P)-binding oxidoreductase family protein prolycopene isomerase, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase, chloroplastic carotenoid isomerase prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic-like prolycopene isomerase 1, chloroplastic-like prolycopene isomerase, chloroplastic carotenoid isomerase 1 prolycopene isomerase, chloroplastic-like prolycopene isomerase, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase 1, chloroplastic prolycopene isomerase, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00260 Glycine, serine and threonine metabolism 2
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 3
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
gma00052 Galactose metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 6
ppo01200 Carbon metabolism 6
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 7
ghi00053 Ascorbate and aldarate metabolism 6
ghi01200 Carbon metabolism 5
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 7
ghi00053 Ascorbate and aldarate metabolism 6
ghi01200 Carbon metabolism 5
ghi00260 Glycine, serine and threonine metabolism 4
ghi00630 Glyoxylate and dicarboxylate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
cit00970 Aminoacyl-tRNA biosynthesis 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae00051 Fructose and mannose metabolism 2
tae00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100262553 842152 100810986 103838658 18111148 25494380 107920901 107925337 106434256 106396155 102625319 101247017 102596427 107805441 107787313 4334739 100281491 123114258 123123744 123395020 8080169 100838735 5723233 5721453
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