ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_16g676650v5	uncharacterized protein
ath-u.5	GAMMA-ADAPTIN 1	gamma-adaptin 1
ath-u.5	AT1G60070	Adaptor protein complex AP-1, gamma subunit
gma-u.5	100802164	AP-1 complex subunit gamma-2
gma-u.5	100817075	AP-1 complex subunit gamma-2
gma-u.5	100815152	AP-1 complex subunit gamma-2
sly-u.5	101262006	AP-1 complex subunit gamma-2-like
sly-u.5	101256586	AP-1 complex subunit gamma-2-like
osa-u.5	4331060	AP-1 complex subunit gamma-2
osa-u.5	4340249	AP-1 complex subunit gamma-2
zma-u.5	100193027	AP-1 complex subunit gamma-1
zma-u.5	100381886	AP-1 complex subunit gamma-1
zma-u.5	100501945	AP-1 complex subunit gamma-2
bra-r.6	103840720	AP-1 complex subunit gamma-1
bra-r.6	103829252	AP-1 complex subunit gamma-1
vvi-u.5	100241508	AP-1 complex subunit gamma-2
ppo-u.5	7468838	AP-1 complex subunit gamma-2
ppo-u.5	7454966	AP-1 complex subunit gamma-2
mtr-u.5	25501281	AP-1 complex subunit gamma-2
mtr-u.5	11411112	AP-1 complex subunit gamma-2
tae-r.2	123146015	AP-1 complex subunit gamma-2
tae-r.2	123128870	AP-1 complex subunit gamma-2
tae-r.2	123139390	AP-1 complex subunit gamma-2
hvu-r.1	123407263	AP-1 complex subunit gamma-2-like
hvu-r.1	123406266	AP-1 complex subunit gamma-2-like
ghi-r.1	107948540	AP-1 complex subunit gamma-2
ghi-r.1	107942723	AP-1 complex subunit gamma-2
ghi-r.1	107909653	AP-1 complex subunit gamma-2
bna-r.1	106358107	AP-1 complex subunit gamma-1-like
bna-r.1	106367581	AP-1 complex subunit gamma-1
bna-r.1	106371047	AP-1 complex subunit gamma-1
sbi-r.1	110431058	AP-1 complex subunit gamma-2-like
sbi-r.1	8084666	AP-1 complex subunit gamma-2
sot-r.1	102584677	AP-1 complex subunit gamma-2-like
sot-r.1	102585295	AP-1 complex subunit gamma-2-like
cit-r.1	102628648	AP-1 complex subunit gamma-2-like
bdi-r.1	100842707	AP-1 complex subunit gamma-2
bdi-r.1	100833599	AP-1 complex subunit gamma-2
nta-r.1	107810750	AP-1 complex subunit gamma-2
nta-r.1	107773525	AP-1 complex subunit gamma-2
nta-r.1	107790516	AP-1 complex subunit gamma-2

Top 50 coexpressed genes to CHLRE_16g676650v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_16g676650v5 (cre-r.1 coexpression data)

CoexMap"5721486"

[Cytoscape]

Annotation

functional annotation

KEGG

cre04142 [list] [network] Lysosome (27 genes)

GO BP

GO:0006896 [list] [network] Golgi to vacuole transport	(4 genes)	IEA
GO:0006898 [list] [network] receptor-mediated endocytosis	(11 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(159 genes)	IEA

GO CC

GO:0030121 [list] [network] AP-1 adaptor complex	(2 genes)	IEA
GO:0030117 [list] [network] membrane coat	(31 genes)	IEA
GO:0005794 [list] [network] Golgi apparatus	(203 genes)	IEA

GO MF

GO:0035615 [list] [network] clathrin adaptor activity

(4 genes)

IEA

Protein

XP_042916083.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 3, chlo_mito 3

(predict for XP_042916083.1)

Subcellular
localization
TargetP

mito 7, other 3

(predict for XP_042916083.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_16g676650v5	ath-u.5 for GAMMA-ADAPTIN 1	ath-u.5 for AT1G60070	gma-u.5 for 100802164	gma-u.5 for 100817075	gma-u.5 for 100815152	sly-u.5 for 101262006	sly-u.5 for 101256586	osa-u.5 for 4331060	osa-u.5 for 4340249	zma-u.5 for 100193027	zma-u.5 for 100381886	zma-u.5 for 100501945	bra-r.6 for 103840720	bra-r.6 for 103829252	vvi-u.5 for 100241508	ppo-u.5 for 7468838	ppo-u.5 for 7454966	mtr-u.5 for 25501281	mtr-u.5 for 11411112	tae-r.2 for 123146015	tae-r.2 for 123128870	tae-r.2 for 123139390	hvu-r.1 for 123407263	hvu-r.1 for 123406266	ghi-r.1 for 107948540	ghi-r.1 for 107942723	ghi-r.1 for 107909653	bna-r.1 for 106358107	bna-r.1 for 106367581	bna-r.1 for 106371047	sbi-r.1 for 110431058	sbi-r.1 for 8084666	sot-r.1 for 102584677	sot-r.1 for 102585295	cit-r.1 for 102628648	bdi-r.1 for 100842707	bdi-r.1 for 100833599	nta-r.1 for 107810750	nta-r.1 for 107773525	nta-r.1 for 107790516

Ortholog

Ortholog ID: 3748

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

gamma-adaptin 1

Adaptor protein complex AP-1, gamma subunit

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-1-like

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-1-like

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	7
cre04144	Endocytosis	4
cre00190	Oxidative phosphorylation	2
cre04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath04148	Efferocytosis	4
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	4
ath04144	Endocytosis	3
ath00100	Steroid biosynthesis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma04142	Lysosome	4
gma00190	Oxidative phosphorylation	2
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	6
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4
sly04144	Endocytosis	3
sly05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	6
sly04144	Endocytosis	5
sly05100	Bacterial invasion of epithelial cells	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	3
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	4
zma04144	Endocytosis	3
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04144	Endocytosis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	4
bra04144	Endocytosis	4
bra05100	Bacterial invasion of epithelial cells	3
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	10
bra04142	Lysosome	6
bra05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03013	Nucleocytoplasmic transport	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	4
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04144	Endocytosis	2
mtr05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae04142	Lysosome	3
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4
hvu05100	Bacterial invasion of epithelial cells	2
hvu04142	Lysosome	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	8
ghi04144	Endocytosis	2
ghi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	6
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	3
bna03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	6
sot04144	Endocytosis	6
sot05100	Bacterial invasion of epithelial cells	4
sot04141	Protein processing in endoplasmic reticulum	3
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04142	Lysosome	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	4
bdi04144	Endocytosis	3
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	3
nta00513	Various types of N-glycan biosynthesis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	6
nta04144	Endocytosis	2
nta05100	Bacterial invasion of epithelial cells	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	6
nta03015	mRNA surveillance pathway	4
nta04382	Cornified envelope formation	4
nta04144	Endocytosis	2
nta05100	Bacterial invasion of epithelial cells	2

Expression

Expression pattern

Entrez Gene ID^*

5721486

839001

842301

100802164

100817075

100815152

101262006

101256586

4331060

4340249

100193027

100381886

100501945

103840720

103829252

100241508

7468838

7454966

25501281

11411112

123146015

123128870

123139390

123407263

123406266

107909653

107901981

107945256

106358107

106367581

106401170

110431058

8084666

102584677

102585295

102628648

100842707

100833599

107810750

107773525

107790516

The preparation time of this page was 0.2 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	3	2	2	3	2	1	2	2	3	2	3	3	2	2	1	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_16g676650v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_16g676650v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**