ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-r.7	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.9	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-e.2	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.4.bio	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.4.hor	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.4.lig	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.4.str	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-m.4.tis	AT1G60070	Adaptor protein complex AP-1, gamma subunit
ath-u.5	GAMMA-ADAPTIN 1	gamma-adaptin 1
gma-u.5	100815152	AP-1 complex subunit gamma-2
gma-u.5	100817075	AP-1 complex subunit gamma-2
gma-u.5	100802164	AP-1 complex subunit gamma-2
vvi-u.5	100241508	AP-1 complex subunit gamma-2
ppo-u.5	7468838	AP-1 complex subunit gamma-2
ppo-u.5	7454966	AP-1 complex subunit gamma-2
mtr-u.5	25501281	AP-1 complex subunit gamma-2
mtr-u.5	11411112	AP-1 complex subunit gamma-2
sly-u.5	101256586	AP-1 complex subunit gamma-2-like
sly-u.5	101262006	AP-1 complex subunit gamma-2-like
osa-u.5	4340249	AP-1 complex subunit gamma-2
osa-u.5	4331060	AP-1 complex subunit gamma-2
zma-u.5	100501945	AP-1 complex subunit gamma-2
zma-u.5	100381886	AP-1 complex subunit gamma-1
zma-u.5	100193027	AP-1 complex subunit gamma-1

Top 50 coexpressed genes to AT1G60070 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G60070 (ath-u.5 coexpression data)

CoexMap"842301"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04142 [list] [network] Lysosome (82 genes)

GO BP

GO CC

GO MF

Protein

NP_001185270.1 [sequence] [blastp]
NP_176215.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, cyto 1, golg 1, nucl_plas 1	(predict for NP_001185270.1)
chlo 5, nucl 2, cyto 2, cyto_nucl 2	(predict for NP_176215.2)

Subcellular
localization
TargetP

mito 4, other 3	(predict for NP_001185270.1)
mito 4, other 3	(predict for NP_176215.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT1G60070	ath-r.7 for AT1G60070	ath-m.9 for AT1G60070	ath-e.2 for AT1G60070	ath-m.4.bio for AT1G60070	ath-m.4.hor for AT1G60070	ath-m.4.lig for AT1G60070	ath-m.4.str for AT1G60070	ath-m.4.tis for AT1G60070	ath-u.5 for GAMMA-ADAPTIN 1	gma-u.5 for 100815152	gma-u.5 for 100817075	gma-u.5 for 100802164	vvi-u.5 for 100241508	ppo-u.5 for 7468838	ppo-u.5 for 7454966	mtr-u.5 for 25501281	mtr-u.5 for 11411112	sly-u.5 for 101256586	sly-u.5 for 101262006	osa-u.5 for 4340249	osa-u.5 for 4331060	zma-u.5 for 100501945	zma-u.5 for 100381886	zma-u.5 for 100193027

Ortholog

Ortholog ID: 3748

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Adaptor protein complex AP-1, gamma subunit

gamma-adaptin 1

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-1-like

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-1

AP-1 complex subunit gamma-2

AP-1 complex subunit gamma-2-like

AP-1 complex subunit gamma-2

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	4
ath04144	Endocytosis	3
ath00100	Steroid biosynthesis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath04148	Efferocytosis	4
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	10
bra04142	Lysosome	6
bra05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	4
bra04144	Endocytosis	4
bra05100	Bacterial invasion of epithelial cells	3
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04142	Lysosome	4
bna04144	Endocytosis	3
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	8
ghi04144	Endocytosis	2
ghi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	6
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04142	Lysosome	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	6
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4
gma04142	Lysosome	4
gma00190	Oxidative phosphorylation	2
gma04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	4
vvi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3
ppo03013	Nucleocytoplasmic transport	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	4
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04144	Endocytosis	2
mtr05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	6
sly04144	Endocytosis	5
sly05100	Bacterial invasion of epithelial cells	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4
sly04144	Endocytosis	3
sly05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	6
sot04144	Endocytosis	6
sot05100	Bacterial invasion of epithelial cells	4
sot04141	Protein processing in endoplasmic reticulum	3
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	6
nta04144	Endocytosis	2
nta05100	Bacterial invasion of epithelial cells	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	6
nta03015	mRNA surveillance pathway	4
nta04382	Cornified envelope formation	4
nta04144	Endocytosis	2
nta05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	3
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04144	Endocytosis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4
hvu05100	Bacterial invasion of epithelial cells	2
hvu04142	Lysosome	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	4
bdi04144	Endocytosis	3
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	7
cre04144	Endocytosis	4
cre00190	Oxidative phosphorylation	2
cre04145	Phagosome	2

Expression

Expression pattern

Entrez Gene ID^*

842301

839001

103829252

103840720

106358107

106367581

107909653

107901981

102628648

100815152

100802164

100241508

7468838

7454966

25501281

11411112

101256586

101262006

102584677

102585295

107773525

107790516

4340249

4331060

100193027

100501945

123146015

123128870

123407263

123406266

110431058

8084666

100833599

100842707

5721486

The preparation time of this page was 3.7 [sec].


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	10	3	1	2	2	2	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G60070 (ath-u.5 coexpression data)

Top 50 enrichment test to AT1G60070 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**