ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_06g251951v5	uncharacterized protein
ath-u.5	FY	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100791889	flowering time control protein FY
gma-u.5	100788493	flowering time control protein FY
sly-u.5	101263044	flowering time control protein FY
osa-u.5	4325772	flowering time control protein FY
zma-u.5	100381986	WD repeat-containing protein 33
bra-r.6	103856018	flowering time control protein FY
bra-r.6	103850872	flowering time control protein FY
vvi-u.5	100263567	flowering time control protein FY
ppo-u.5	7462786	flowering time control protein FY
ppo-u.5	7487007	flowering time control protein FY
mtr-u.5	11443981	flowering time control protein FY
tae-r.2	123122123	flowering time control protein FY
tae-r.2	123104354	flowering time control protein FY
tae-r.2	123112633	flowering time control protein FY
hvu-r.1	123399837	flowering time control protein FY
ghi-r.1	107939237	flowering time control protein FY
ghi-r.1	107915529	flowering time control protein FY
bna-r.1	106431943	flowering time control protein FY
bna-r.1	106384227	flowering time control protein FY
bna-r.1	111204276	flowering time control protein FY
sbi-r.1	8077357	flowering time control protein FY
sot-r.1	102597827	flowering time control protein FY
cit-r.1	102626956	flowering time control protein FY
bdi-r.1	100834292	flowering time control protein FY
nta-r.1	107813173	flowering time control protein FY
nta-r.1	107787003	flowering time control protein FY

Annotation

functional annotation

KEGG

cre03015 [list] [network] mRNA surveillance pathway (40 genes)

GO BP

GO CC

GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex

(14 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042923318.1 [sequence] [blastp]

Subcellular
localization
wolf

pero 5, cyto 4, nucl 1, extr 1

(predict for XP_042923318.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042923318.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_06g251951v5	ath-u.5 for FY	gma-u.5 for 100791889	gma-u.5 for 100788493	sly-u.5 for 101263044	osa-u.5 for 4325772	zma-u.5 for 100381986	bra-r.6 for 103856018	bra-r.6 for 103850872	vvi-u.5 for 100263567	ppo-u.5 for 7462786	ppo-u.5 for 7487007	mtr-u.5 for 11443981	tae-r.2 for 123122123	tae-r.2 for 123104354	tae-r.2 for 123112633	hvu-r.1 for 123399837	ghi-r.1 for 107939237	ghi-r.1 for 107915529	bna-r.1 for 106431943	bna-r.1 for 106384227	bna-r.1 for 111204276	sbi-r.1 for 8077357	sot-r.1 for 102597827	cit-r.1 for 102626956	bdi-r.1 for 100834292	nta-r.1 for 107813173	nta-r.1 for 107787003

Ortholog

Ortholog ID: 7717

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

Transducin/WD40 repeat-like superfamily protein

flowering time control protein FY

WD repeat-containing protein 33

flowering time control protein FY

flowering time control protein FY-like

flowering time control protein FY

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	4
ath03040	Spliceosome	2
ath03420	Nucleotide excision repair	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4
gma03040	Spliceosome	3
gma03013	Nucleocytoplasmic transport	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03015	mRNA surveillance pathway	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5
zma03015	mRNA surveillance pathway	3
zma03022	Basal transcription factors	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi03040	Spliceosome	2
vvi04141	Protein processing in endoplasmic reticulum	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03015	mRNA surveillance pathway	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi03015	mRNA surveillance pathway	2
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03013	Nucleocytoplasmic transport	3
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03013	Nucleocytoplasmic transport	3
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03015	mRNA surveillance pathway	4
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03040	Spliceosome	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03420	Nucleotide excision repair	2
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit03015	mRNA surveillance pathway	3
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00440	Phosphonate and phosphinate metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

5722182

831191

100791889

100788493

101263044

4325772

100381986

103856018

103850872

100263567

7462786

7487007

11443981

123122123

123104354

123112633

123399837

107939237

107915529

106384227

111204276

111205562

8077357

102597827

102626956

100834292

107813173

107787003

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_06g251951v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g251951v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	1	2	1	2	1	3	1	2	3	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_06g251951v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_06g251951v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**