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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123399837   flowering time control protein FY 
 tae-r.2   123122123   flowering time control protein FY 
 tae-r.2   123104354   flowering time control protein FY 
 tae-r.2   123112633   flowering time control protein FY 
 bdi-r.1   100834292   flowering time control protein FY 
 osa-u.5   4325772   flowering time control protein FY 
 zma-u.5   100381986   WD repeat-containing protein 33 
 sbi-r.1   8077357   flowering time control protein FY 
 ath-u.5   FY   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100791889   flowering time control protein FY 
 gma-u.5   100788493   flowering time control protein FY 
 sly-u.5   101263044   flowering time control protein FY 
 bra-r.6   103850872   flowering time control protein FY 
 bra-r.6   103856018   flowering time control protein FY 
 vvi-u.5   100263567   flowering time control protein FY 
 ppo-u.5   7487007   flowering time control protein FY 
 ppo-u.5   7462786   flowering time control protein FY 
 mtr-u.5   11443981   flowering time control protein FY 
 ghi-r.1   107939237   flowering time control protein FY 
 ghi-r.1   107915529   flowering time control protein FY 
 bna-r.1   111204276   flowering time control protein FY 
 bna-r.1   106431943   flowering time control protein FY 
 bna-r.1   106384227   flowering time control protein FY 
 sot-r.1   102597827   flowering time control protein FY 
 cit-r.1   102626956   flowering time control protein FY 
 nta-r.1   107813173   flowering time control protein FY 
 nta-r.1   107787003   flowering time control protein FY 
 cre-r.1   CHLRE_06g251951v5   uncharacterized protein 

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Top 50 coexpressed genes to 123399837 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123399837 (hvu-r.1 coexpression data)

CoexMap"123399837"


hvuLOC123399837 | Entrez gene ID : 123399837    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 1 1 1 2 1 2 1 2 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03015 [list] [network] mRNA surveillance pathway (117 genes)
GO BP
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (11 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4692 genes)  IEA  
Protein XP_044950153.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  pero 4,  cyto_nucl 3  (predict for XP_044950153.1)
Subcellular
localization
TargetP
other 5,  chlo 4  (predict for XP_044950153.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123399837
tae-r.2
for
123122123
tae-r.2
for
123104354
tae-r.2
for
123112633
bdi-r.1
for
100834292
osa-u.5
for
4325772
zma-u.5
for
100381986
sbi-r.1
for
8077357
ath-u.5
for
FY
gma-u.5
for
100791889
gma-u.5
for
100788493
sly-u.5
for
101263044
bra-r.6
for
103850872
bra-r.6
for
103856018
vvi-u.5
for
100263567
ppo-u.5
for
7487007
ppo-u.5
for
7462786
mtr-u.5
for
11443981
ghi-r.1
for
107939237
ghi-r.1
for
107915529
bna-r.1
for
111204276
bna-r.1
for
106431943
bna-r.1
for
106384227
sot-r.1
for
102597827
cit-r.1
for
102626956
nta-r.1
for
107813173
nta-r.1
for
107787003
cre-r.1
for
CHLRE_06g251951v5


Ortholog ID: 7717
Species hvu tae tae tae bdi osa zma sbi ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC123399837 LOC123122123 LOC123104354 LOC123112633 LOC100834292 LOC4325772 LOC100381986 LOC8077357 FY LOC100791889 LOC100788493 LOC101263044 LOC103850872 LOC103856018 LOC100263567 LOC7487007 LOC7462786 LOC11443981 LOC107939237 LOC107915529 LOC111204276 LOC106384227 LOC111205562 LOC102597827 LOC102626956 LOC107813173 LOC107787003 CHLRE_06g251951v5
Function* flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY WD repeat-containing protein 33 flowering time control protein FY Transducin/WD40 repeat-like superfamily protein flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY-like flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 3
zma03022 Basal transcription factors 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03040 Spliceosome 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 2
ath03420 Nucleotide excision repair 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 3
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 3
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 4
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123399837 123122123 123104354 123112633 100834292 4325772 100381986 8077357 831191 100791889 100788493 101263044 103850872 103856018 100263567 7487007 7462786 11443981 107939237 107915529 111204276 106384227 111205562 102597827 102626956 107813173 107787003 5722182
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