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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   FY   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   FY   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100791889   flowering time control protein FY 
 gma-u.5   100788493   flowering time control protein FY 
 vvi-u.5   100263567   flowering time control protein FY 
 ppo-u.5   7462786   flowering time control protein FY 
 ppo-u.5   7487007   flowering time control protein FY 
 mtr-u.5   11443981   flowering time control protein FY 
 sly-u.5   101263044   flowering time control protein FY 
 osa-u.5   4325772   flowering time control protein FY 
 zma-u.5   100381986   WD repeat-containing protein 33 

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Top 50 coexpressed genes to FY (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FY (ath-u.5 coexpression data)

CoexMap"831191"


athFY | Entrez gene ID : 831191      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (9 genes)  IEA  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (185 genes)  IGI  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318555.1 [sequence] [blastp]
NP_001331011.1 [sequence] [blastp]
NP_001331012.1 [sequence] [blastp]
NP_196852.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  pero 4,  chlo 1,  extr 1,  E.R. 1  (predict for NP_001318555.1)
nucl 4,  pero 4,  chlo 1,  extr 1,  E.R. 1  (predict for NP_001331011.1)
nucl 4,  pero 4,  chlo 1,  extr 1,  E.R. 1  (predict for NP_001331012.1)
nucl 4,  pero 4,  cyto_nucl 3  (predict for NP_196852.3)
Subcellular
localization
TargetP
other 6  (predict for NP_001318555.1)
chlo 6,  other 4  (predict for NP_001331011.1)
chlo 6,  other 4  (predict for NP_001331012.1)
other 5  (predict for NP_196852.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
FY

.
ath-r.7
for
FY

.
ath-m.9
for
FY

.
ath-e.2
for
FY

.
ath-m.4.bio
for
FY

.
ath-m.4.hor
for
FY

.
ath-m.4.lig
for
FY

.
ath-m.4.str
for
FY

.
ath-m.4.tis
for
FY

.
gma-u.5
for
100791889

.
gma-u.5
for
100788493

.
vvi-u.5
for
100263567

.
ppo-u.5
for
7462786

.
ppo-u.5
for
7487007

.
mtr-u.5
for
11443981

.
sly-u.5
for
101263044

.
osa-u.5
for
4325772

.
zma-u.5
for
100381986

.


Ortholog ID: 7717
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol FY LOC100788493 LOC100791889 LOC101263044 LOC4325772 LOC100381986 LOC103850872 LOC103856018 LOC100263567 LOC7487007 LOC7462786 LOC11443981 LOC123104354 LOC123112633 LOC123399837 LOC107915529 LOC107939237 LOC106384227 LOC111204276 CHLRE_06g251951v5 LOC8077357 LOC102597827 LOC102626956 LOC100834292 LOC107813173 LOC107787003
Function* Transducin/WD40 repeat-like superfamily protein flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY WD repeat-containing protein 33 flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY uncharacterized protein flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY flowering time control protein FY
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 2
ath03420 Nucleotide excision repair 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 3
zma03022 Basal transcription factors 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 3
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 3
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03040 Spliceosome 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831191 100788493 100791889 101263044 4325772 100381986 103850872 103856018 100263567 7487007 7462786 11443981 123104354 123112633 123399837 107915529 107939237 106384227 111204276 5722182 8077357 102597827 102626956 100834292 107813173 107787003
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