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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g521200v5   uncharacterized protein 
 ath-u.5   RFC1   replication factor C1 
 gma-u.5   100802809   replication factor C subunit 1 
 gma-u.5   100790070   replication factor C subunit 1 
 sly-u.5   101249468   replication factor C subunit 1 
 osa-u.5   4350754   replication factor C subunit 1-like 
 zma-u.5   103648088   replication factor C subunit 1 
 bra-r.6   103851417   replication factor C subunit 1 
 vvi-u.5   100249625   replication factor C subunit 1 
 ppo-u.5   7486662   replication factor C subunit 1 
 mtr-u.5   25492173   replication factor C subunit 1 
 tae-r.2   123162978   replication factor C subunit 1 
 tae-r.2   123170123   replication factor C subunit 1 
 tae-r.2   123148292   replication factor C subunit 1 
 hvu-r.1   123412767   replication factor C subunit 1 
 ghi-r.1   121216233   replication factor C subunit 1 
 ghi-r.1   107927582   replication factor C subunit 1 
 bna-r.1   106427329   replication factor C subunit 1 
 sbi-r.1   8071946   replication factor C subunit 1 
 sbi-r.1   8054977   replication factor C subunit 1 
 sot-r.1   102604147   replication factor C subunit 1 
 cit-r.1   102623585   replication factor C subunit 1 
 bdi-r.1   100841258   replication factor C subunit 1 
 nta-r.1   107761191   replication factor C subunit 1 
 nta-r.1   107763539   replication factor C subunit 1 

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Top 50 coexpressed genes to CHLRE_12g521200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g521200v5 (cre-r.1 coexpression data)

CoexMap"5722576"


creCHLRE_12g521200v5 | Entrez gene ID : 5722576      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 2 1 2 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03410 [list] [network] Base excision repair (25 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
GO BP
GO:0006260 [list] [network] DNA replication  (93 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (229 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (5 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (5 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001696917.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 1,  E.R. 1,  cysk 1,  cyto_pero 1  (predict for XP_001696917.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001696917.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g521200v5
ath-u.5
for
RFC1
gma-u.5
for
100802809
gma-u.5
for
100790070
sly-u.5
for
101249468
osa-u.5
for
4350754
zma-u.5
for
103648088
bra-r.6
for
103851417
vvi-u.5
for
100249625
ppo-u.5
for
7486662
mtr-u.5
for
25492173
tae-r.2
for
123162978
tae-r.2
for
123170123
tae-r.2
for
123148292
hvu-r.1
for
123412767
ghi-r.1
for
121216233
ghi-r.1
for
107927582
bna-r.1
for
106427329
sbi-r.1
for
8071946
sbi-r.1
for
8054977
sot-r.1
for
102604147
cit-r.1
for
102623585
bdi-r.1
for
100841258
nta-r.1
for
107761191
nta-r.1
for
107763539


Ortholog ID: 10318
Species cre ath gma gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_12g521200v5 RFC1 LOC100802809 LOC100790070 LOC101249468 LOC4350754 LOC103648088 LOC103851417 LOC100249625 LOC7486662 LOC25492173 LOC123162978 LOC123170123 LOC123148292 LOC123412767 LOC121216233 LOC107927582 LOC106427329 LOC8071946 LOC8054977 LOC102604147 LOC102623585 LOC100841258 LOC107761191 LOC107763539
Function* uncharacterized protein replication factor C1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1-like replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1 replication factor C subunit 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 4
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 2
cre03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 7
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 5
ppo03040 Spliceosome 5
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03013 Nucleocytoplasmic transport 3
mtr03015 mRNA surveillance pathway 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03015 mRNA surveillance pathway 2
bna04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
cit03015 mRNA surveillance pathway 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5722576 832261 100802809 100790070 101249468 4350754 103648088 103851417 100249625 7486662 25492173 123162978 123170123 123148292 123412767 121216233 107927582 106427329 8071946 8054977 102604147 102623585 100841258 107761191 107763539
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