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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g158200v5   uncharacterized protein 
 ath-u.5   HDA2   histone deacetylase 2 
 gma-u.5   HDA18   histone deacetylase 
 sly-u.5   101261348   histone deacetylase 2 
 osa-u.5   4341352   histone deacetylase 2 
 zma-u.5   100277470   uncharacterized LOC100277470 
 vvi-u.5   100264550   histone deacetylase 2 
 ppo-u.5   18100651   histone deacetylase 2 
 mtr-u.5   11414514   histone deacetylase 2 
 tae-r.2   123156138   histone deacetylase 2 
 tae-r.2   123148039   histone deacetylase 2 
 tae-r.2   123165082   histone deacetylase 2 
 hvu-r.1   123407315   histone deacetylase 2 
 ghi-r.1   107893401   histone deacetylase 2 
 ghi-r.1   107937978   histone deacetylase 2 
 bna-r.1   106348560   histone deacetylase 2 
 bna-r.1   106348753   histone deacetylase 2 
 sbi-r.1   8079300   histone deacetylase 2 
 sbi-r.1   8085534   histone deacetylase 2 
 sot-r.1   102595280   histone deacetylase 2 
 cit-r.1   102630752   histone deacetylase 2 
 bdi-r.1   100833556   histone deacetylase 2 
 nta-r.1   107817285   histone deacetylase 2 
 nta-r.1   107816878   histone deacetylase 2-like 

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Top 50 coexpressed genes to CHLRE_03g158200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g158200v5 (cre-r.1 coexpression data)

CoexMap"5723029"


creCHLRE_03g158200v5 | Entrez gene ID : 5723029    
Species cre ath gma sly osa zma vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta bra
Paralog 1 1 1 1 1 1 1 1 1 3 1 2 2 2 1 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (11 genes)  IEA  
Protein XP_042925771.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_042925771.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042925771.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g158200v5
ath-u.5
for
HDA2
gma-u.5
for
HDA18
sly-u.5
for
101261348
osa-u.5
for
4341352
zma-u.5
for
100277470
vvi-u.5
for
100264550
ppo-u.5
for
18100651
mtr-u.5
for
11414514
tae-r.2
for
123156138
tae-r.2
for
123148039
tae-r.2
for
123165082
hvu-r.1
for
123407315
ghi-r.1
for
107893401
ghi-r.1
for
107937978
bna-r.1
for
106348560
bna-r.1
for
106348753
sbi-r.1
for
8079300
sbi-r.1
for
8085534
sot-r.1
for
102595280
cit-r.1
for
102630752
bdi-r.1
for
100833556
nta-r.1
for
107817285
nta-r.1
for
107816878


Ortholog ID: 10328
Species cre ath gma sly osa zma vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_03g158200v5 HDA2 HDA18 LOC101261348 LOC4341352 LOC100277470 LOC100264550 LOC18100651 LOC11414514 LOC123156138 LOC123148039 LOC123165082 LOC123407315 LOC107893401 LOC107937978 LOC106348560 LOC106348753 LOC8079300 LOC8085534 LOC102595280 LOC102630752 LOC100833556 LOC107817285 LOC107816878
Function* uncharacterized protein histone deacetylase 2 histone deacetylase histone deacetylase 2 histone deacetylase 2 uncharacterized LOC100277470 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna04120 Ubiquitin mediated proteolysis 3
bna03010 Ribosome 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna04120 Ubiquitin mediated proteolysis 2
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723029 832673 100781276 101261348 4341352 100277470 100264550 18100651 11414514 123156138 123148039 123165082 123407315 107893401 107937978 106348560 106348753 8079300 8085534 102595280 102630752 100833556 107817285 107816878
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