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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   HDA2   histone deacetylase 2 
 ath-r.7   HDA2   histone deacetylase 2 
 ath-m.9   HDA2   histone deacetylase 2 
 ath-e.2   HDA2   histone deacetylase 2 
 ath-m.4.bio   HDA2   histone deacetylase 2 
 ath-m.4.hor   HDA2   histone deacetylase 2 
 ath-m.4.lig   HDA2   histone deacetylase 2 
 ath-m.4.str   HDA2   histone deacetylase 2 
 ath-m.4.tis   HDA2   histone deacetylase 2 
 gma-u.5   HDA18   histone deacetylase 
 vvi-u.5   100264550   histone deacetylase 2 
 ppo-u.5   18100651   histone deacetylase 2 
 mtr-u.5   11414514   histone deacetylase 2 
 sly-u.5   101261348   histone deacetylase 2 
 osa-u.5   4341352   histone deacetylase 2 
 zma-u.5   100277470   uncharacterized LOC100277470 

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Top 50 coexpressed genes to HDA2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HDA2 (ath-u.5 coexpression data)

CoexMap"832673"


athHDA2 | Entrez gene ID : 832673      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  ISS  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  ISS  
Protein NP_568480.2 [sequence] [blastp]
NP_851078.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  extr 1  (predict for NP_568480.2)
chlo 6,  cyto 1,  extr 1  (predict for NP_851078.1)
Subcellular
localization
TargetP
other 5  (predict for NP_568480.2)
other 5  (predict for NP_851078.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
HDA2

.
ath-r.7
for
HDA2

.
ath-m.9
for
HDA2

.
ath-e.2
for
HDA2

.
ath-m.4.bio
for
HDA2

.
ath-m.4.hor
for
HDA2

.
ath-m.4.lig
for
HDA2

.
ath-m.4.str
for
HDA2

.
ath-m.4.tis
for
HDA2

.
gma-u.5
for
HDA18

.
vvi-u.5
for
100264550

.
ppo-u.5
for
18100651

.
mtr-u.5
for
11414514

.
sly-u.5
for
101261348

.
osa-u.5
for
4341352

.
zma-u.5
for
100277470

.


Ortholog ID: 10328
Species ath gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol HDA2 HDA18 LOC101261348 LOC4341352 LOC100277470 LOC100264550 LOC18100651 LOC11414514 LOC123148039 LOC123165082 LOC123407315 LOC107893401 LOC107937978 LOC106348560 LOC106348753 CHLRE_03g158200v5 LOC8085534 LOC8079300 LOC102595280 LOC102630752 LOC100833556 LOC107817285 LOC107816878
Function* histone deacetylase 2 histone deacetylase histone deacetylase 2 histone deacetylase 2 uncharacterized LOC100277470 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 uncharacterized protein histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2 histone deacetylase 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 3
tae00480 Glutathione metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna04120 Ubiquitin mediated proteolysis 3
bna03010 Ribosome 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna04120 Ubiquitin mediated proteolysis 2
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832673 100781276 101261348 4341352 100277470 100264550 18100651 11414514 123148039 123165082 123407315 107893401 107937978 106348560 106348753 5723029 8085534 8079300 102595280 102630752 100833556 107817285 107816878
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