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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_06g278174v5   uncharacterized protein 
 ath-u.5   XRCC2   homolog of X-ray repair cross complementing 2 (XRCC2) 
 gma-u.5   100818578   DNA repair protein XRCC2 homolog 
 gma-u.5   100807727   DNA repair protein XRCC2 homolog 
 sly-u.5   101255234   DNA repair protein XRCC2 homolog 
 zma-u.5   100383265   uncharacterized LOC100383265 
 bra-r.6   103837530   DNA repair protein XRCC2 homolog 
 vvi-u.5   100262890   DNA repair protein XRCC2 homolog 
 tae-r.2   123079905   DNA repair protein XRCC2 homolog 
 ghi-r.1   107918646   DNA repair protein XRCC2 homolog 
 ghi-r.1   107893562   DNA repair protein XRCC2 homolog 
 bna-r.1   106364140   DNA repair protein XRCC2 homolog 
 bna-r.1   106403050   DNA repair protein XRCC2 homolog 
 bna-r.1   106357643   DNA repair protein XRCC2 homolog 
 sbi-r.1   8060990   DNA repair protein XRCC2 homolog 
 sot-r.1   102597626   DNA repair protein XRCC2 homolog 
 sot-r.1   102588794   DNA repair protein XRCC2 homolog 
 bdi-r.1   100842954   DNA repair protein XRCC2 homolog 
 nta-r.1   107820410   DNA repair protein XRCC2 homolog 
 nta-r.1   107831709   DNA repair protein XRCC2 homolog 

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Top 50 coexpressed genes to CHLRE_06g278174v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_06g278174v5 (cre-r.1 coexpression data)

CoexMap"5723645"


creCHLRE_06g278174v5 | Entrez gene ID : 5723645    
Species cre ath gma sly zma bra vvi tae ghi bna sbi sot bdi nta ppo mtr osa cit hvu
Paralog 1 1 2 1 1 1 1 1 2 3 1 2 1 2 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (82 genes)  IEA  
GO CC
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (4 genes)  IEA  
GO:0005657 [list] [network] replication fork  (33 genes)  IEA  
GO MF
Protein XP_001698088.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  mito 1,  pero 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_001698088.2)
Subcellular
localization
TargetP
other 8  (predict for XP_001698088.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_06g278174v5
ath-u.5
for
XRCC2
gma-u.5
for
100818578
gma-u.5
for
100807727
sly-u.5
for
101255234
zma-u.5
for
100383265
bra-r.6
for
103837530
vvi-u.5
for
100262890
tae-r.2
for
123079905
ghi-r.1
for
107918646
ghi-r.1
for
107893562
bna-r.1
for
106364140
bna-r.1
for
106403050
bna-r.1
for
106357643
sbi-r.1
for
8060990
sot-r.1
for
102597626
sot-r.1
for
102588794
bdi-r.1
for
100842954
nta-r.1
for
107820410
nta-r.1
for
107831709


Ortholog ID: 9194
Species cre ath gma gma sly zma bra vvi tae ghi ghi bna bna bna sbi sot sot bdi nta nta
Symbol CHLRE_06g278174v5 XRCC2 LOC100818578 LOC100807727 LOC101255234 LOC100383265 LOC103837530 LOC100262890 LOC123079905 LOC107918646 LOC107893562 LOC106364140 LOC106403050 LOC106357643 LOC8060990 LOC102588794 LOC102581295 LOC100842954 LOC107820410 LOC107831709
Function* uncharacterized protein homolog of X-ray repair cross complementing 2 (XRCC2) DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog uncharacterized LOC100383265 DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03430 Mismatch repair 3
cre03030 DNA replication 2
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03440 Homologous recombination 5
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
vvi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 3
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5723645 836573 100818578 100807727 101255234 100383265 103837530 100262890 123079905 107918646 107893562 106364140 106403050 106357643 8060990 102588794 102581295 100842954 107820410 107831709
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