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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   XRCC2   homolog of X-ray repair cross complementing 2 (XRCC2) 
 ath-r.7   XRCC2   homolog of X-ray repair cross complementing 2 (XRCC2) 
 ath-e.2   XRCC2   homolog of X-ray repair cross complementing 2 (XRCC2) 
 bra-r.6   103837530   DNA repair protein XRCC2 homolog 
 bna-r.1   106403050   DNA repair protein XRCC2 homolog 
 bna-r.1   106364140   DNA repair protein XRCC2 homolog 
 bna-r.1   106357643   DNA repair protein XRCC2 homolog 
 ghi-r.1   107918646   DNA repair protein XRCC2 homolog 
 ghi-r.1   107893562   DNA repair protein XRCC2 homolog 
 gma-u.5   100818578   DNA repair protein XRCC2 homolog 
 gma-u.5   100807727   DNA repair protein XRCC2 homolog 
 vvi-u.5   100262890   DNA repair protein XRCC2 homolog 
 sly-u.5   101255234   DNA repair protein XRCC2 homolog 
 sot-r.1   102597626   DNA repair protein XRCC2 homolog 
 sot-r.1   102581295   DNA repair protein XRCC2 homolog 
 nta-r.1   107831709   DNA repair protein XRCC2 homolog 
 nta-r.1   107820410   DNA repair protein XRCC2 homolog 
 zma-u.5   100383265   uncharacterized LOC100383265 
 tae-r.2   123079905   DNA repair protein XRCC2 homolog 
 sbi-r.1   8060990   DNA repair protein XRCC2 homolog 
 bdi-r.1   100842954   DNA repair protein XRCC2 homolog 
 cre-r.1   CHLRE_06g278174v5   uncharacterized protein 

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Top 50 coexpressed genes to XRCC2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRCC2 (ath-u.5 coexpression data)

CoexMap"836573"


athXRCC2 | Entrez gene ID : 836573      
Species ath bra bna ghi gma vvi sly sot nta zma tae sbi bdi cre osa ppo mtr hvu cit
Paralog 3 1 3 2 2 1 1 2 2 1 1 1 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IEA IMP  
GO:0007131 [list] [network] reciprocal meiotic recombination  (44 genes)  IMP  
GO CC
GO:0005657 [list] [network] replication fork  (2 genes)  IEA  
GO:0033063 [list] [network] Rad51B-Rad51C-Rad51D-XRCC2 complex  (2 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (9 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IEA  
Protein NP_001318876.1 [sequence] [blastp]
NP_001330642.1 [sequence] [blastp]
NP_001330643.1 [sequence] [blastp]
NP_001330644.1 [sequence] [blastp]
NP_001330645.1 [sequence] [blastp]
NP_001330646.1 [sequence] [blastp]
NP_001330647.1 [sequence] [blastp]
NP_001330648.1 [sequence] [blastp]
NP_001330649.1 [sequence] [blastp]
NP_201257.2 [sequence] [blastp]
NP_851268.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_001318876.1)
cyto 6,  nucl 4  (predict for NP_001330642.1)
cyto 6,  nucl 4  (predict for NP_001330643.1)
cyto 6,  nucl 4  (predict for NP_001330644.1)
cyto 5,  nucl 4  (predict for NP_001330645.1)
nucl 5,  cyto 3,  chlo 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001330646.1)
cyto 6,  nucl 4  (predict for NP_001330647.1)
cyto 5,  nucl 4  (predict for NP_001330648.1)
cyto 5,  nucl 3,  cyto_pero 3  (predict for NP_001330649.1)
cyto 5,  nucl 4,  chlo 1,  extr 1  (predict for NP_201257.2)
cyto 6,  nucl 4  (predict for NP_851268.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001318876.1)
other 8  (predict for NP_001330642.1)
other 8  (predict for NP_001330643.1)
other 8  (predict for NP_001330644.1)
other 8  (predict for NP_001330645.1)
other 8  (predict for NP_001330646.1)
other 8  (predict for NP_001330647.1)
other 8  (predict for NP_001330648.1)
other 8  (predict for NP_001330649.1)
other 8  (predict for NP_201257.2)
other 8  (predict for NP_851268.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
XRCC2
ath-r.7
for
XRCC2
ath-e.2
for
XRCC2
bra-r.6
for
103837530
bna-r.1
for
106403050
bna-r.1
for
106364140
bna-r.1
for
106357643
ghi-r.1
for
107918646
ghi-r.1
for
107893562
gma-u.5
for
100818578
gma-u.5
for
100807727
vvi-u.5
for
100262890
sly-u.5
for
101255234
sot-r.1
for
102597626
sot-r.1
for
102581295
nta-r.1
for
107831709
nta-r.1
for
107820410
zma-u.5
for
100383265
tae-r.2
for
123079905
sbi-r.1
for
8060990
bdi-r.1
for
100842954
cre-r.1
for
CHLRE_06g278174v5


Ortholog ID: 9194
Species ath bra bna bna bna ghi ghi gma gma vvi sly sot sot nta nta zma tae sbi bdi cre
Symbol XRCC2 LOC103837530 LOC106403050 LOC106364140 LOC106357643 LOC107918646 LOC107893562 LOC100818578 LOC100807727 LOC100262890 LOC101255234 LOC102581295 LOC102588794 LOC107831709 LOC107820410 LOC100383265 LOC123079905 LOC8060990 LOC100842954 CHLRE_06g278174v5
Function* homolog of X-ray repair cross complementing 2 (XRCC2) DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog uncharacterized LOC100383265 DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog DNA repair protein XRCC2 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03440 Homologous recombination 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03440 Homologous recombination 5
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
vvi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 3
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03430 Mismatch repair 3
cre03030 DNA replication 2
cre03410 Base excision repair 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836573 103837530 106403050 106364140 106357643 107918646 107893562 100818578 100807727 100262890 101255234 102581295 102588794 107831709 107820410 100383265 123079905 8060990 100842954 5723645
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