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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g213450v5   uncharacterized protein 
 ath-u.5   VPS2.1   SNF7 family protein 
 gma-u.5   100791887   vacuolar protein sorting-associated protein 2 homolog 1 
 gma-u.5   100526885   vacuolar protein sorting-associated protein 
 sly-u.5   101247586   SNF7 family protein 
 osa-u.5   4342791   vacuolar protein sorting-associated protein 2 homolog 1 
 osa-u.5   4351205   vacuolar protein sorting-associated protein 2 homolog 1 
 zma-u.5   100284688   charged multivesicular body protein 2a 
 zma-u.5   100193992   uncharacterized LOC100193992 
 zma-u.5   103647208   vacuolar protein sorting-associated protein 2 homolog 1-like 
 bra-r.6   103860351   vacuolar protein sorting-associated protein 2 homolog 1 
 vvi-u.5   100255989   vacuolar protein sorting-associated protein 2 homolog 1 
 ppo-u.5   7478111   vacuolar protein sorting-associated protein 2 homolog 1 
 ppo-u.5   18107704   vacuolar protein sorting-associated protein 2 homolog 1 
 mtr-u.5   25500541   vacuolar protein sorting-associated protein 2 homolog 1 
 mtr-u.5   25486474   vacuolar protein sorting-associated protein 2 homolog 1 
 tae-r.2   123086260   vacuolar protein sorting-associated protein 2 homolog 1 
 tae-r.2   123091770   vacuolar protein sorting-associated protein 2 homolog 1 
 tae-r.2   123096805   vacuolar protein sorting-associated protein 2 homolog 1 
 hvu-r.1   123448277   vacuolar protein sorting-associated protein 2 homolog 1 
 ghi-r.1   107929946   vacuolar protein sorting-associated protein 2 homolog 1 
 ghi-r.1   107932231   vacuolar protein sorting-associated protein 2 homolog 1 
 bna-r.1   106418627   vacuolar protein sorting-associated protein 2 homolog 1-like 
 bna-r.1   106439778   vacuolar protein sorting-associated protein 2 homolog 1 
 sbi-r.1   8069133   vacuolar protein sorting-associated protein 2 homolog 1 
 sbi-r.1   8086026   vacuolar protein sorting-associated protein 2 homolog 1 
 sot-r.1   102595344   vacuolar protein sorting-associated protein 2 homolog 1 
 cit-r.1   102610845   vacuolar protein sorting-associated protein 2 homolog 1 
 bdi-r.1   100821134   vacuolar protein sorting-associated protein 2 homolog 1 
 bdi-r.1   100840560   vacuolar protein sorting-associated protein 2 homolog 1 
 nta-r.1   107764456   vacuolar protein sorting-associated protein 2 homolog 1 
 nta-r.1   107831976   vacuolar protein sorting-associated protein 2 homolog 1 

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Top 50 coexpressed genes to CHLRE_04g213450v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g213450v5 (cre-r.1 coexpression data)

CoexMap"5724208"


creCHLRE_04g213450v5 | Entrez gene ID : 5724208      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 2 3 1 1 2 2 3 1 2 2 2 1 1 2 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre04144 [list] [network] Endocytosis (52 genes)
GO BP
GO:0032509 [list] [network] endosome transport via multivesicular body sorting pathway  (20 genes)  IEA  
GO:0045324 [list] [network] late endosome to vacuole transport  (22 genes)  IEA  
GO:0015031 [list] [network] protein transport  (207 genes)  IEA  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (6 genes)  IEA  
GO:0005771 [list] [network] multivesicular body  (8 genes)  IEA  
GO MF
Protein XP_001698676.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl_plas 2,  nucl 2,  plas 1,  cyto_mito 1  (predict for XP_001698676.2)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_001698676.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g213450v5
ath-u.5
for
VPS2.1
gma-u.5
for
100791887
gma-u.5
for
100526885
sly-u.5
for
101247586
osa-u.5
for
4342791
osa-u.5
for
4351205
zma-u.5
for
100284688
zma-u.5
for
100193992
zma-u.5
for
103647208
bra-r.6
for
103860351
vvi-u.5
for
100255989
ppo-u.5
for
7478111
ppo-u.5
for
18107704
mtr-u.5
for
25500541
mtr-u.5
for
25486474
tae-r.2
for
123086260
tae-r.2
for
123091770
tae-r.2
for
123096805
hvu-r.1
for
123448277
ghi-r.1
for
107929946
ghi-r.1
for
107932231
bna-r.1
for
106418627
bna-r.1
for
106439778
sbi-r.1
for
8069133
sbi-r.1
for
8086026
sot-r.1
for
102595344
cit-r.1
for
102610845
bdi-r.1
for
100821134
bdi-r.1
for
100840560
nta-r.1
for
107764456
nta-r.1
for
107831976


Ortholog ID: 6485
Species cre ath gma gma sly osa osa zma zma zma bra vvi ppo ppo mtr mtr tae tae tae hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol CHLRE_04g213450v5 VPS2.1 LOC100791887 LOC100526885 LOC101247586 LOC4342791 LOC4351205 LOC100284688 LOC100193992 LOC103647208 LOC103860351 LOC100255989 LOC7478111 LOC18107704 LOC25500541 LOC25486474 LOC123086260 LOC123091770 LOC123096805 LOC123448277 LOC107929946 LOC107932231 LOC106418627 LOC106439778 LOC8069133 LOC8086026 LOC102595344 LOC102610845 LOC100821134 LOC100840560 LOC107764456 LOC107831976
Function* uncharacterized protein SNF7 family protein vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein SNF7 family protein vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 charged multivesicular body protein 2a uncharacterized LOC100193992 vacuolar protein sorting-associated protein 2 homolog 1-like vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1-like vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1 vacuolar protein sorting-associated protein 2 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 6
cre03250 Viral life cycle - HIV-1 2
cre03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04120 Ubiquitin mediated proteolysis 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma03250 Viral life cycle - HIV-1 2
gma03272 Virion - Hepatitis viruses 2
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 5
osa04145 Phagosome 3
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 5
osa03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04626 Plant-pathogen interaction 3
zma04144 Endocytosis 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 6
zma04144 Endocytosis 4
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 6
vvi04626 Plant-pathogen interaction 2
vvi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03250 Viral life cycle - HIV-1 2
ppo03272 Virion - Hepatitis viruses 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 8
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 8
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
tae00561 Glycerolipid metabolism 3
tae00566 Sulfoquinovose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 6
tae03250 Viral life cycle - HIV-1 2
tae03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 12
ghi03272 Virion - Hepatitis viruses 4
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 8
ghi03272 Virion - Hepatitis viruses 4
ghi04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 16
bna04145 Phagosome 9
bna04148 Efferocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 16
bna04145 Phagosome 9
bna04148 Efferocytosis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 6
sbi03250 Viral life cycle - HIV-1 3
sbi03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04130 SNARE interactions in vesicular transport 3
bdi04144 Endocytosis 2
bdi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi04145 Phagosome 4
bdi04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 8
nta03272 Virion - Hepatitis viruses 4
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 8
nta03272 Virion - Hepatitis viruses 4
nta00440 Phosphonate and phosphinate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724208 815211 100791887 100526885 101247586 4342791 4351205 100284688 100193992 103647208 103860351 100255989 7478111 18107704 25500541 25486474 123086260 123091770 123096805 123448277 107929946 107932231 106418627 106439778 8069133 8086026 102595344 102610845 100821134 100840560 107764456 107831976
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