ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_15g635650v5	uncharacterized protein
ath-u.5	AT3G08840	D-alanine-D-alanine ligase family
gma-u.5	100775955	uncharacterized LOC100775955
gma-u.5	100819595	uncharacterized LOC100819595
sly-u.5	104649147	uncharacterized LOC104649147
sly-u.5	101268046	uncharacterized LOC101268046
osa-u.5	4344370	uncharacterized LOC4344370
zma-u.5	100383342	D-alanine--D-alanine ligase family
bra-r.6	103859329	uncharacterized LOC103859329
bra-r.6	103830077	uncharacterized LOC103830077
vvi-u.5	100265424	uncharacterized LOC100265424
ppo-u.5	7468075	uncharacterized LOC7468075
mtr-u.5	11407566	uncharacterized LOC11407566
tae-r.2	123043572	uncharacterized LOC123043572
tae-r.2	123187386	uncharacterized LOC123187386
tae-r.2	123051441	uncharacterized LOC123051441
hvu-r.1	123425193	uncharacterized LOC123425193
ghi-r.1	107948973	D-alanine--D-alanine ligase
ghi-r.1	107899599	uncharacterized LOC107899599
bna-r.1	106451640	uncharacterized LOC106451640
bna-r.1	106442173	uncharacterized LOC106442173
bna-r.1	106430373	uncharacterized LOC106430373
sbi-r.1	8077518	uncharacterized LOC8077518
sbi-r.1	8086409	uncharacterized LOC8086409
sot-r.1	102602208	uncharacterized LOC102602208
cit-r.1	102620172	uncharacterized LOC102620172
bdi-r.1	100840063	uncharacterized LOC100840063
nta-r.1	107762573	uncharacterized LOC107762573
nta-r.1	107782046	uncharacterized LOC107782046

Top 50 coexpressed genes to CHLRE_15g635650v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_15g635650v5 (cre-r.1 coexpression data)

CoexMap"5726155"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009252 [list] [network] peptidoglycan biosynthetic process

(4 genes)

IEA

GO CC

GO MF

GO:0008716 [list] [network] D-alanine-D-alanine ligase activity	(4 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(704 genes)	IEA
GO:0005524 [list] [network] ATP binding	(1223 genes)	IEA

Protein

XP_042916380.1 [sequence] [blastp]
XP_042916381.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, mito 3	(predict for XP_042916380.1)
chlo 7, mito 3	(predict for XP_042916381.1)

Subcellular
localization
TargetP

chlo 6, mito 5	(predict for XP_042916380.1)
chlo 6, mito 5	(predict for XP_042916381.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_15g635650v5	ath-u.5 for AT3G08840	gma-u.5 for 100775955	gma-u.5 for 100819595	sly-u.5 for 104649147	sly-u.5 for 101268046	osa-u.5 for 4344370	zma-u.5 for 100383342	bra-r.6 for 103859329	bra-r.6 for 103830077	vvi-u.5 for 100265424	ppo-u.5 for 7468075	mtr-u.5 for 11407566	tae-r.2 for 123043572	tae-r.2 for 123187386	tae-r.2 for 123051441	hvu-r.1 for 123425193	ghi-r.1 for 107948973	ghi-r.1 for 107899599	bna-r.1 for 106451640	bna-r.1 for 106442173	bna-r.1 for 106430373	sbi-r.1 for 8077518	sbi-r.1 for 8086409	sot-r.1 for 102602208	cit-r.1 for 102620172	bdi-r.1 for 100840063	nta-r.1 for 107762573	nta-r.1 for 107782046

Ortholog

Ortholog ID: 7200

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

D-alanine-D-alanine ligase family

uncharacterized LOC100775955

uncharacterized LOC100819595

uncharacterized LOC104649147

uncharacterized LOC101268046

uncharacterized LOC4344370

D-alanine--D-alanine ligase family

uncharacterized LOC103859329

uncharacterized LOC103830077

uncharacterized LOC100265424

uncharacterized LOC7468075

uncharacterized LOC11407566

uncharacterized LOC123043572

uncharacterized LOC123187386

uncharacterized LOC123051441

uncharacterized LOC123425193

D-alanine--D-alanine ligase

uncharacterized LOC107899599

uncharacterized LOC106451640

uncharacterized LOC106430373

uncharacterized LOC106353000

uncharacterized LOC8077518

uncharacterized LOC8086409

uncharacterized LOC102602208

uncharacterized LOC102620172

uncharacterized LOC100840063

uncharacterized LOC107762573

uncharacterized LOC107782046

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	3
sly00020	Citrate cycle (TCA cycle)	3
sly00620	Pyruvate metabolism	3
sly00785	Lipoic acid metabolism	3
sly01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	3
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	3
mtr03020	RNA polymerase	2
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	4
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	10
bna04075	Plant hormone signal transduction	5
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna04082	Neuroactive ligand signaling	4
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi00100	Steroid biosynthesis	2
bdi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

5726155

820031

100775955

100819595

104649147

101268046

4344370

100383342

103859329

103830077

100265424

7468075

11407566

123043572

123187386

123051441

123425193

107948973

107899599

106451640

106430373

106353000

8077518

8086409

102602208

102620172

100840063

107762573

107782046

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	2	1	1	2	1	1	1	3	1	2	3	2	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_15g635650v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_15g635650v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**