ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106442173	uncharacterized LOC106442173
bna-r.1	106430373	uncharacterized LOC106430373
bna-r.1	106353000	uncharacterized LOC106353000
bna-r.1	106451640	uncharacterized LOC106451640
bra-r.6	103859329	uncharacterized LOC103859329
bra-r.6	103830077	uncharacterized LOC103830077
ath-u.5	AT3G08840	D-alanine-D-alanine ligase family
ghi-r.1	107948973	D-alanine--D-alanine ligase
ghi-r.1	107899599	uncharacterized LOC107899599
cit-r.1	102620172	uncharacterized LOC102620172
gma-u.5	100819595	uncharacterized LOC100819595
gma-u.5	100775955	uncharacterized LOC100775955
vvi-u.5	100265424	uncharacterized LOC100265424
ppo-u.5	7468075	uncharacterized LOC7468075
mtr-u.5	11407566	uncharacterized LOC11407566
sly-u.5	104649147	uncharacterized LOC104649147
sly-u.5	101268046	uncharacterized LOC101268046
sot-r.1	102602208	uncharacterized LOC102602208
nta-r.1	107762573	uncharacterized LOC107762573
nta-r.1	107782046	uncharacterized LOC107782046
osa-u.5	4344370	uncharacterized LOC4344370
zma-u.5	100383342	D-alanine--D-alanine ligase family
tae-r.2	123187386	uncharacterized LOC123187386
tae-r.2	123051441	uncharacterized LOC123051441
tae-r.2	123043572	uncharacterized LOC123043572
hvu-r.1	123425193	uncharacterized LOC123425193
sbi-r.1	8077518	uncharacterized LOC8077518
sbi-r.1	8086409	uncharacterized LOC8086409
bdi-r.1	100840063	uncharacterized LOC100840063
cre-r.1	CHLRE_15g635650v5	uncharacterized protein

Top 50 coexpressed genes to 106442173 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106442173 (bna-r.1 coexpression data)

CoexMap"106442173"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009252 [list] [network] peptidoglycan biosynthetic process

(4 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(1821 genes)

IEA

GO MF

GO:0008716 [list] [network] D-alanine-D-alanine ligase activity	(4 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5995 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(6718 genes)	IEA

Protein

XP_048632314.1 [sequence] [blastp]
XP_048632315.1 [sequence] [blastp]
XP_048632316.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 1, mito 1, cyto 1, cysk 1, cyto_mito 1, nucl_plas 1, mito_plas 1	(predict for XP_048632314.1)
chlo 9	(predict for XP_048632315.1)
chlo 3, cyto 2, plas 1, cyto_nucl 1, cyto_E.R. 1	(predict for XP_048632316.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_048632314.1)
chlo 5	(predict for XP_048632315.1)
chlo 9	(predict for XP_048632316.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106442173	bna-r.1 for 106430373	bna-r.1 for 106353000	bna-r.1 for 106451640	bra-r.6 for 103859329	bra-r.6 for 103830077	ath-u.5 for AT3G08840	ghi-r.1 for 107948973	ghi-r.1 for 107899599	cit-r.1 for 102620172	gma-u.5 for 100819595	gma-u.5 for 100775955	vvi-u.5 for 100265424	ppo-u.5 for 7468075	mtr-u.5 for 11407566	sly-u.5 for 104649147	sly-u.5 for 101268046	sot-r.1 for 102602208	nta-r.1 for 107762573	nta-r.1 for 107782046	osa-u.5 for 4344370	zma-u.5 for 100383342	tae-r.2 for 123187386	tae-r.2 for 123051441	tae-r.2 for 123043572	hvu-r.1 for 123425193	sbi-r.1 for 8077518	sbi-r.1 for 8086409	bdi-r.1 for 100840063	cre-r.1 for CHLRE_15g635650v5

Ortholog

Ortholog ID: 7200

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106430373

uncharacterized LOC106353000

uncharacterized LOC106451640

uncharacterized LOC103859329

uncharacterized LOC103830077

D-alanine-D-alanine ligase family

D-alanine--D-alanine ligase

uncharacterized LOC107899599

uncharacterized LOC102620172

uncharacterized LOC100819595

uncharacterized LOC100775955

uncharacterized LOC100265424

uncharacterized LOC7468075

uncharacterized LOC11407566

uncharacterized LOC104649147

uncharacterized LOC101268046

uncharacterized LOC102602208

uncharacterized LOC107762573

uncharacterized LOC107782046

uncharacterized LOC4344370

D-alanine--D-alanine ligase family

uncharacterized LOC123187386

uncharacterized LOC123051441

uncharacterized LOC123043572

uncharacterized LOC123425193

uncharacterized LOC8077518

uncharacterized LOC8086409

uncharacterized LOC100840063

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna04082	Neuroactive ligand signaling	4
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	10
bna04075	Plant hormone signal transduction	5
bna00460	Cyanoamino acid metabolism	2
bna00500	Starch and sucrose metabolism	2
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2
gma00260	Glycine, serine and threonine metabolism	2
gma00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma02010	ABC transporters	4
gma00220	Arginine biosynthesis	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	3
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	3
mtr03020	RNA polymerase	2
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00010	Glycolysis / Gluconeogenesis	3
sly00020	Citrate cycle (TCA cycle)	3
sly00620	Pyruvate metabolism	3
sly00785	Lipoic acid metabolism	3
sly01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	2
nta01240	Biosynthesis of cofactors	2
nta00904	Diterpenoid biosynthesis	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	5
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00620	Pyruvate metabolism	4
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00052	Galactose metabolism	3
tae00511	Other glycan degradation	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3
tae00604	Glycosphingolipid biosynthesis - ganglio series	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi00100	Steroid biosynthesis	2
bdi00909	Sesquiterpenoid and triterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

106430373

106353000

106451640

103859329

103830077

820031

107948973

107899599

102620172

100819595

100775955

100265424

7468075

11407566

104649147

101268046

102602208

107762573

107782046

4344370

100383342

123187386

123051441

123043572

123425193

8077518

8086409

100840063

5726155

The preparation time of this page was 2.1 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	2	1	2	1	1	1	2	1	2	1	1	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106442173 (bna-r.1 coexpression data)

Top 50 enrichment test to 106442173 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**