ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_02g095104v5	uncharacterized protein
ath-u.5	AT2G22720	SPT2 chromatin protein
gma-u.5	100819902	protein SPT2 homolog
gma-u.5	100776977	protein SPT2 homolog
sly-u.5	101264295	uncharacterized LOC101264295
osa-u.5	4350317	uncharacterized LOC4350317
zma-u.5	103641991	uncharacterized LOC103641991
zma-u.5	103646089	trichohyalin
bra-r.6	103842470	protein spt2
bra-r.6	103864381	protein SPT2 homolog
vvi-u.5	100241361	protein spt2
ppo-u.5	7480195	protein spt2
ppo-u.5	7476436	uncharacterized LOC7476436
mtr-u.5	112422237	neurofilament heavy polypeptide
tae-r.2	123143675	RNA polymerase II degradation factor 1
tae-r.2	123132138	putative uncharacterized protein DDB_G0271606
tae-r.2	123136165	putative mediator of RNA polymerase II transcription subunit 12
hvu-r.1	123401336	trichohyalin
ghi-r.1	107950504	protein SPT2 homolog
ghi-r.1	107935265	protein SPT2 homolog
bna-r.1	106446442	protein SPT2 homolog
bna-r.1	106415603	protein SPT2 homolog
sbi-r.1	8055984	protein SPT2 homolog
sot-r.1	102586524	uncharacterized LOC102586524
sot-r.1	102580481	eukaryotic translation initiation factor 3 subunit A
cit-r.1	102629424	protein SPT2
bdi-r.1	100835931	protein SPT2 homolog
nta-r.1	107829979	uncharacterized LOC107829979
nta-r.1	107801877	uncharacterized LOC107801877
nta-r.1	107779433	uncharacterized LOC107779433

Annotation

functional annotation

KEGG

GO BP

GO:0006334 [list] [network] nucleosome assembly	(73 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(405 genes)	IEA

GO CC

GO:0005730 [list] [network] nucleolus

(152 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(34 genes)	IEA
GO:0003677 [list] [network] DNA binding	(670 genes)	IEA

Protein

XP_001701224.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 3

(predict for XP_001701224.2)

Subcellular
localization
TargetP

other 5, chlo 3

(predict for XP_001701224.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g095104v5	ath-u.5 for AT2G22720	gma-u.5 for 100819902	gma-u.5 for 100776977	sly-u.5 for 101264295	osa-u.5 for 4350317	zma-u.5 for 103641991	zma-u.5 for 103646089	bra-r.6 for 103842470	bra-r.6 for 103864381	vvi-u.5 for 100241361	ppo-u.5 for 7480195	ppo-u.5 for 7476436	mtr-u.5 for 112422237	tae-r.2 for 123143675	tae-r.2 for 123132138	tae-r.2 for 123136165	hvu-r.1 for 123401336	ghi-r.1 for 107950504	ghi-r.1 for 107935265	bna-r.1 for 106446442	bna-r.1 for 106415603	sbi-r.1 for 8055984	sot-r.1 for 102586524	sot-r.1 for 102580481	cit-r.1 for 102629424	bdi-r.1 for 100835931	nta-r.1 for 107829979	nta-r.1 for 107801877	nta-r.1 for 107779433

Ortholog

Ortholog ID: 5063

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

SPT2 chromatin protein

protein SPT2 homolog

uncharacterized LOC101264295

uncharacterized LOC4350317

uncharacterized LOC103641991

trichohyalin

protein spt2

protein SPT2 homolog

protein spt2

uncharacterized LOC7476436

neurofilament heavy polypeptide

RNA polymerase II degradation factor 1

putative uncharacterized protein DDB_G0271606

putative mediator of RNA polymerase II transcription subunit 12

trichohyalin

protein SPT2 homolog

protein spt2

protein SPT2 homolog

uncharacterized LOC102586524

eukaryotic translation initiation factor 3 subunit A

protein SPT2

protein SPT2 homolog

uncharacterized LOC107801877

uncharacterized LOC107779433

uncharacterized LOC107772257

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03015	mRNA surveillance pathway	3
bra04016	MAPK signaling pathway - plant	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04016	MAPK signaling pathway - plant	2
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2
cit04626	Plant-pathogen interaction	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2

Expression

Expression pattern

Entrez Gene ID^*

5726736

816802

100819902

100776977

101264295

4350317

103641991

103646089

103842470

103864381

100241361

7480195

7476436

112422237

123143675

123132138

123136165

123401336

107950504

107935265

106446442

106371330

106392114

8055984

102586524

102580481

102629424

100835931

107801877

107779433

107772257

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_02g095104v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g095104v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	1	1	2	2	1	2	1	3	1	2	2	1	2	1	1	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g095104v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g095104v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**