ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103641991	uncharacterized LOC103641991
zma-r.6	103641991	uncharacterized LOC103641991
zma-m.5	103641991	uncharacterized LOC103641991
zma-u.5	103646089	trichohyalin
sbi-r.1	8055984	protein SPT2 homolog
osa-u.5	4350317	uncharacterized LOC4350317
tae-r.2	123143675	RNA polymerase II degradation factor 1
tae-r.2	123136165	putative mediator of RNA polymerase II transcription subunit 12
tae-r.2	123132138	putative uncharacterized protein DDB_G0271606
hvu-r.1	123401336	trichohyalin
bdi-r.1	100835931	protein SPT2 homolog
ath-u.5	AT2G22720	SPT2 chromatin protein
gma-u.5	100819902	protein SPT2 homolog
gma-u.5	100776977	protein SPT2 homolog
sly-u.5	101264295	uncharacterized LOC101264295
bra-r.6	103864381	protein SPT2 homolog
bra-r.6	103842470	protein spt2
vvi-u.5	100241361	protein spt2
ppo-u.5	7480195	protein spt2
ppo-u.5	7476436	uncharacterized LOC7476436
mtr-u.5	112422237	neurofilament heavy polypeptide
ghi-r.1	107935265	protein SPT2 homolog
ghi-r.1	107950504	protein SPT2 homolog
bna-r.1	106392114	protein spt2
bna-r.1	106446442	protein SPT2 homolog
sot-r.1	102580481	eukaryotic translation initiation factor 3 subunit A
sot-r.1	102586524	uncharacterized LOC102586524
cit-r.1	102629424	protein SPT2
nta-r.1	107772257	uncharacterized LOC107772257
nta-r.1	107779433	uncharacterized LOC107779433
nta-r.1	107829979	uncharacterized LOC107829979
cre-r.1	CHLRE_02g095104v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006360 [list] [network] transcription by RNA polymerase I	(17 genes)	IEA
GO:0006334 [list] [network] nucleosome assembly	(36 genes)	IEA

GO CC

GO:0005730 [list] [network] nucleolus

(246 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(70 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2288 genes)	IEA

Protein

XP_008663521.1 [sequence] [blastp]
XP_008663522.1 [sequence] [blastp]
XP_008663523.1 [sequence] [blastp]
XP_035819418.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_008663521.1)
nucl 10	(predict for XP_008663522.1)
nucl 10	(predict for XP_008663523.1)
nucl 10	(predict for XP_035819418.1)

Subcellular
localization
TargetP

other 9	(predict for XP_008663521.1)
other 9	(predict for XP_008663522.1)
other 9	(predict for XP_008663523.1)
other 9	(predict for XP_035819418.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103641991	zma-r.6 for 103641991	zma-m.5 for 103641991	zma-u.5 for 103646089	sbi-r.1 for 8055984	osa-u.5 for 4350317	tae-r.2 for 123143675	tae-r.2 for 123136165	tae-r.2 for 123132138	hvu-r.1 for 123401336	bdi-r.1 for 100835931	ath-u.5 for AT2G22720	gma-u.5 for 100819902	gma-u.5 for 100776977	sly-u.5 for 101264295	bra-r.6 for 103864381	bra-r.6 for 103842470	vvi-u.5 for 100241361	ppo-u.5 for 7480195	ppo-u.5 for 7476436	mtr-u.5 for 112422237	ghi-r.1 for 107935265	ghi-r.1 for 107950504	bna-r.1 for 106392114	bna-r.1 for 106446442	sot-r.1 for 102580481	sot-r.1 for 102586524	cit-r.1 for 102629424	nta-r.1 for 107772257	nta-r.1 for 107779433	nta-r.1 for 107829979	cre-r.1 for CHLRE_02g095104v5

Ortholog

Ortholog ID: 5063

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC103641991

trichohyalin

protein SPT2 homolog

uncharacterized LOC4350317

RNA polymerase II degradation factor 1

putative mediator of RNA polymerase II transcription subunit 12

putative uncharacterized protein DDB_G0271606

trichohyalin

protein SPT2 homolog

SPT2 chromatin protein

protein SPT2 homolog

uncharacterized LOC101264295

protein SPT2 homolog

protein spt2

uncharacterized LOC7476436

neurofilament heavy polypeptide

protein SPT2 homolog

protein spt2

protein SPT2 homolog

eukaryotic translation initiation factor 3 subunit A

uncharacterized LOC102586524

protein SPT2

uncharacterized LOC107772257

uncharacterized LOC107779433

uncharacterized LOC107801877

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04016	MAPK signaling pathway - plant	2
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03015	mRNA surveillance pathway	3
bra04016	MAPK signaling pathway - plant	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2
cit04626	Plant-pathogen interaction	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

103641991

103646089

8055984

4350317

123143675

123136165

123132138

123401336

100835931

816802

100819902

100776977

101264295

103864381

103842470

100241361

7480195

7476436

112422237

107935265

107950504

106392114

106446442

106371330

102580481

102586524

102629424

107772257

107779433

107801877

5726736

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103641991 (zma-u.5 coexpression data)

Top 50 enrichment test to 103641991 (zma-u.5 coexpression data)


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	1	3	1	1	1	2	1	2	1	2	1	2	2	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103641991 (zma-u.5 coexpression data)

Top 50 enrichment test to 103641991 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**