ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_02g077300v5	uncharacterized protein
ath-u.5	FIB2	fibrillarin 2
ath-u.5	FIB1	fibrillarin 1
gma-u.5	100797625	rRNA 2'-O-methyltransferase fibrillarin 2
gma-u.5	100789137	rRNA 2'-O-methyltransferase fibrillarin 2
sly-u.5	101261490	rRNA 2'-O-methyltransferase fibrillarin 2-like
osa-u.5	4331181	rRNA 2'-O-methyltransferase fibrillarin 2
osa-u.5	9266224	rRNA 2'-O-methyltransferase fibrillarin 1
zma-u.5	100282167	uncharacterized LOC100282167
bra-r.6	103861582	mediator of RNA polymerase II transcription subunit 36a
bra-r.6	103834862	mediator of RNA polymerase II transcription subunit 36a
vvi-u.5	100266267	rRNA 2'-O-methyltransferase fibrillarin 1
ppo-u.5	7474066	rRNA 2'-O-methyltransferase fibrillarin 1
ppo-u.5	7484920	rRNA 2'-O-methyltransferase fibrillarin 1
mtr-u.5	25496400	rRNA 2'-O-methyltransferase fibrillarin 1
mtr-u.5	11440720	rRNA 2'-O-methyltransferase fibrillarin 1
tae-r.2	123165498	rRNA 2'-O-methyltransferase fibrillarin 1
tae-r.2	123139921	rRNA 2'-O-methyltransferase fibrillarin 1
tae-r.2	123129055	rRNA 2'-O-methyltransferase fibrillarin 1
hvu-r.1	123404338	rRNA 2'-O-methyltransferase fibrillarin 1-like
hvu-r.1	123407385	rRNA 2'-O-methyltransferase fibrillarin 1-like
ghi-r.1	121209584	rRNA 2'-O-methyltransferase fibrillarin 2
ghi-r.1	107951276	rRNA 2'-O-methyltransferase fibrillarin 2
ghi-r.1	107917830	rRNA 2'-O-methyltransferase fibrillarin 1
bna-r.1	106444625	rRNA 2'-O-methyltransferase fibrillarin 2
bna-r.1	106409785	rRNA 2'-O-methyltransferase fibrillarin 1
bna-r.1	106361337	rRNA 2'-O-methyltransferase fibrillarin 2
sbi-r.1	8065563	probable mediator of RNA polymerase II transcription subunit 36b
sbi-r.1	8059696	probable mediator of RNA polymerase II transcription subunit 36b
sot-r.1	102584645	mediator of RNA polymerase II transcription subunit 36a-like
cit-r.1	102629115	rRNA 2'-O-methyltransferase fibrillarin 1-like
bdi-r.1	100846789	probable mediator of RNA polymerase II transcription subunit 36b
bdi-r.1	100840221	probable mediator of RNA polymerase II transcription subunit 36b
nta-r.1	107779020	rRNA 2'-O-methyltransferase fibrillarin 1-like
nta-r.1	107768907	mediator of RNA polymerase II transcription subunit 36a-like

Top 50 coexpressed genes to CHLRE_02g077300v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_02g077300v5 (cre-r.1 coexpression data)

CoexMap"5727229"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)

GO BP

GO:0000494 [list] [network] box C/D sno(s)RNA 3'-end processing	(1 genes)	IEA
GO:0031167 [list] [network] rRNA methylation	(22 genes)	IEA

GO CC

GO:0031428 [list] [network] box C/D methylation guide snoRNP complex	(4 genes)	IEA
GO:0032040 [list] [network] small-subunit processome	(35 genes)	IEA
GO:0005730 [list] [network] nucleolus	(152 genes)	IEA

GO MF

GO:1990259 [list] [network] histone H2AQ104 methyltransferase activity	(1 genes)	IEA
GO:0008649 [list] [network] rRNA methyltransferase activity	(14 genes)	IEA
GO:0003723 [list] [network] RNA binding	(670 genes)	IEA

Protein

XP_001701853.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, mito 1, chlo 1, nucl 1, cyto_mito 1, mito_plas 1

(predict for XP_001701853.1)

Subcellular
localization
TargetP

other 7, mito 5

(predict for XP_001701853.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_02g077300v5	ath-u.5 for FIB2	ath-u.5 for FIB1	gma-u.5 for 100797625	gma-u.5 for 100789137	sly-u.5 for 101261490	osa-u.5 for 4331181	osa-u.5 for 9266224	zma-u.5 for 100282167	bra-r.6 for 103861582	bra-r.6 for 103834862	vvi-u.5 for 100266267	ppo-u.5 for 7474066	ppo-u.5 for 7484920	mtr-u.5 for 25496400	mtr-u.5 for 11440720	tae-r.2 for 123165498	tae-r.2 for 123139921	tae-r.2 for 123129055	hvu-r.1 for 123404338	hvu-r.1 for 123407385	ghi-r.1 for 121209584	ghi-r.1 for 107951276	ghi-r.1 for 107917830	bna-r.1 for 106444625	bna-r.1 for 106409785	bna-r.1 for 106361337	sbi-r.1 for 8065563	sbi-r.1 for 8059696	sot-r.1 for 102584645	cit-r.1 for 102629115	bdi-r.1 for 100846789	bdi-r.1 for 100840221	nta-r.1 for 107779020	nta-r.1 for 107768907

Ortholog

Ortholog ID: 3718

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

CHLRE_02g077300v5

FIB2

FIB1

Function^*

uncharacterized protein

fibrillarin 2

fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 2-like

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 1

uncharacterized LOC100282167

mediator of RNA polymerase II transcription subunit 36a

probable mediator of RNA polymerase II transcription subunit 36b

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 1-like

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

rRNA 2'-O-methyltransferase fibrillarin 1

rRNA 2'-O-methyltransferase fibrillarin 2

probable mediator of RNA polymerase II transcription subunit 36b

mediator of RNA polymerase II transcription subunit 36a-like

rRNA 2'-O-methyltransferase fibrillarin 1-like

probable mediator of RNA polymerase II transcription subunit 36b

rRNA 2'-O-methyltransferase fibrillarin 1-like

mediator of RNA polymerase II transcription subunit 36a-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	8
cre00230	Purine metabolism	2
cre01232	Nucleotide metabolism	2
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	9
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03008	Ribosome biogenesis in eukaryotes	6
gma00240	Pyrimidine metabolism	2
gma00250	Alanine, aspartate and glutamate metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	5
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	10
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5
mtr03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03008	Ribosome biogenesis in eukaryotes	3
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	9
ghi04626	Plant-pathogen interaction	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	13
bna03018	RNA degradation	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	12
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03008	Ribosome biogenesis in eukaryotes	5
nta03082	ATP-dependent chromatin remodeling	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta03008	Ribosome biogenesis in eukaryotes	7
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

5727229

828668

835323

100797625

100789137

101261490

4331181

9266224

100282167

103861582

103863368

100266267

7474066

7484920

25496400

11440720

123165498

123139921

123159877

123404338

123407385

107917830

107908112

107904604

106444625

106409785

106426404

8065563

8059696

102584645

102629115

100846789

100840221

107779020

107768907

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	2	2	1	2	1	2	1	2	2	3	2	3	3	2	1	1	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_02g077300v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_02g077300v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**