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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_02g078939v5   uncharacterized protein 
 ath-u.5   CRY3   cryptochrome 3 
 gma-u.5   100783312   cryptochrome DASH, chloroplastic/mitochondrial 
 sly-u.5   Cry3   cryptochrome DASH, chloroplastic/mitochondrial-like 
 osa-u.5   4341749   cryptochrome DASH, chloroplastic/mitochondrial-like 
 zma-u.5   100280309   uncharacterized LOC100280309 
 bra-r.6   103874351   cryptochrome DASH, chloroplastic/mitochondrial 
 bra-r.6   103837069   cryptochrome DASH, chloroplastic/mitochondrial 
 vvi-u.5   100252689   cryptochrome DASH, chloroplastic/mitochondrial 
 mtr-u.5   11427347   cryptochrome DASH, chloroplastic/mitochondrial 
 tae-r.2   123164714   cryptochrome DASH, chloroplastic/mitochondrial 
 tae-r.2   123157423   cryptochrome DASH, chloroplastic/mitochondrial 
 tae-r.2   123149308   cryptochrome DASH, chloroplastic/mitochondrial 
 hvu-r.1   123413527   cryptochrome DASH, chloroplastic/mitochondrial 
 ghi-r.1   107961766   cryptochrome DASH, chloroplastic/mitochondrial 
 ghi-r.1   107902007   cryptochrome DASH, chloroplastic/mitochondrial 
 bna-r.1   125577721   cryptochrome DASH, chloroplastic/mitochondrial-like 
 bna-r.1   106381064   cryptochrome DASH, chloroplastic/mitochondrial 
 bna-r.1   106348498   cryptochrome DASH, chloroplastic/mitochondrial-like 
 sbi-r.1   8069379   cryptochrome DASH, chloroplastic/mitochondrial 
 sot-r.1   102585633   cryptochrome DASH, chloroplastic/mitochondrial 
 cit-r.1   102612082   cryptochrome DASH, chloroplastic/mitochondrial 
 bdi-r.1   100845878   cryptochrome DASH, chloroplastic/mitochondrial 
 nta-r.1   107788282   cryptochrome DASH, chloroplastic/mitochondrial 
 nta-r.1   107782681   cryptochrome DASH, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_02g078939v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g078939v5 (cre-r.1 coexpression data)

CoexMap"5727263"


creCHLRE_02g078939v5 | Entrez gene ID : 5727263      
Species cre ath gma sly osa zma bra vvi mtr tae hvu ghi bna sbi sot cit bdi nta ppo
Paralog 1 1 1 1 1 1 2 1 1 3 1 2 3 1 1 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000719 [list] [network] photoreactive repair  (5 genes)  IEA  
GO CC
GO MF
GO:0003913 [list] [network] DNA photolyase activity  (3 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (46 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
Protein XP_042926838.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_042926838.1)
Subcellular
localization
TargetP
chlo 6,  mito 6  (predict for XP_042926838.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_02g078939v5
ath-u.5
for
CRY3
gma-u.5
for
100783312
sly-u.5
for
Cry3
osa-u.5
for
4341749
zma-u.5
for
100280309
bra-r.6
for
103874351
bra-r.6
for
103837069
vvi-u.5
for
100252689
mtr-u.5
for
11427347
tae-r.2
for
123164714
tae-r.2
for
123157423
tae-r.2
for
123149308
hvu-r.1
for
123413527
ghi-r.1
for
107961766
ghi-r.1
for
107902007
bna-r.1
for
125577721
bna-r.1
for
106381064
bna-r.1
for
106348498
sbi-r.1
for
8069379
sot-r.1
for
102585633
cit-r.1
for
102612082
bdi-r.1
for
100845878
nta-r.1
for
107788282
nta-r.1
for
107782681


Ortholog ID: 9694
Species cre ath gma sly osa zma bra bra vvi mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_02g078939v5 CRY3 LOC100783312 Cry3 LOC4341749 LOC100280309 LOC103874351 LOC103837069 LOC100252689 LOC11427347 LOC123164714 LOC123157423 LOC123149308 LOC123413527 LOC107961766 LOC107902007 LOC125577721 LOC106381064 LOC106348498 LOC8069379 LOC102585633 LOC102612082 LOC100845878 LOC107788282 LOC107782681
Function* uncharacterized protein cryptochrome 3 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial-like uncharacterized LOC100280309 cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial-like cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial cryptochrome DASH, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath00940 Phenylpropanoid biosynthesis 2
ath00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
gma00941 Flavonoid biosynthesis 2
gma00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00760 Nicotinate and nicotinamide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi00940 Phenylpropanoid biosynthesis 3
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727263 832554 100783312 101248230 4341749 100280309 103874351 103837069 100252689 11427347 123164714 123157423 123149308 123413527 107961766 107902007 125577721 106381064 106348498 8069379 102585633 102612082 100845878 107788282 107782681
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