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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1  CHLRE_02g084900v5  uncharacterized protein 
 ath-u.5  TPR5  Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5  100808255  RNA polymerase II-associated protein 3 
 gma-u.5  100789345  RNA polymerase II-associated protein 3 
 gma-u.5  100787266  protein SEMI-ROLLED LEAF 2 
 sly-u.5  101250936  uncharacterized LOC101250936 
 osa-u.5  4337703  uncharacterized LOC4337703 
 zma-u.5  100192799  uncharacterized LOC100192799 
 bra-r.6  103849452  RNA polymerase II-associated protein 3 
 bra-r.6  103847644  RNA polymerase II-associated protein 3 
 vvi-u.5  100242521  uncharacterized LOC100242521 
 ppo-u.5  18098586  uncharacterized LOC18098586 
 ppo-u.5  18104012  uncharacterized LOC18104012 
 mtr-u.5  25484695  RNA polymerase II-associated protein 3 
 tae-r.2  123180301  RNA polymerase II-associated protein 3 
 tae-r.2  123110115  RNA polymerase II-associated protein 3 
 tae-r.2  123189819  RNA polymerase II-associated protein 3 
 hvu-r.1  123415986  RNA polymerase II-associated protein 3 
 ghi-r.1  107927305  RNA polymerase II-associated protein 3 
 ghi-r.1  107886346  RNA polymerase II-associated protein 3 
 bna-r.1  111213935  RNA polymerase II-associated protein 3 
 bna-r.1  125585316  RNA polymerase II-associated protein 3-like 
 bna-r.1  106390940  RNA polymerase II-associated protein 3-like 
 sbi-r.1  8068173  RNA polymerase II-associated protein 3 
 sot-r.1  102604898  RNA polymerase II-associated protein 3 
 cit-r.1  102623910  uncharacterized LOC102623910 
 bdi-r.1  100831726  RNA polymerase II-associated protein 3-like 
 bdi-r.1  100837285  RNA polymerase II-associated protein 3 
 bdi-r.1  100839818  RNA polymerase II-associated protein 3 
 nta-r.1  107830436  uncharacterized LOC107830436 
 nta-r.1  107767865  uncharacterized LOC107767865 

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Top 50 coexpressed genes to CHLRE_02g084900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_02g084900v5 (cre-r.1 coexpression data)

CoexMap"5727369"


creCHLRE_02g084900v5 | Entrez gene ID : 5727369
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 1 1 2 1 2 1 3 1 2 3 1 1 1 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042926945.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  nucl_plas 3,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1  (predict for XP_042926945.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042926945.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cre-r.1
for
CHLRE_02g084900v5


ath-u.5
for
TPR5


gma-u.5
for
100808255


gma-u.5
for
100789345


gma-u.5
for
100787266


sly-u.5
for
101250936


osa-u.5
for
4337703


zma-u.5
for
100192799


bra-r.6
for
103849452


bra-r.6
for
103847644


vvi-u.5
for
100242521


ppo-u.5
for
18098586


ppo-u.5
for
18104012


mtr-u.5
for
25484695


tae-r.2
for
123180301


tae-r.2
for
123110115


tae-r.2
for
123189819


hvu-r.1
for
123415986


ghi-r.1
for
107927305


ghi-r.1
for
107886346


bna-r.1
for
111213935


bna-r.1
for
125585316


bna-r.1
for
106390940


sbi-r.1
for
8068173


sot-r.1
for
102604898


cit-r.1
for
102623910


bdi-r.1
for
100831726


bdi-r.1
for
100837285


bdi-r.1
for
100839818


nta-r.1
for
107830436


nta-r.1
for
107767865



Ortholog ID: 7078
Species cre ath gma gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi bdi bdi nta nta
Symbol CHLRE_02g084900v5 TPR5 LOC100808255 LOC100789345 LOC100787266 LOC101250936 LOC4337703 LOC100192799 LOC103849452 LOC103847644 LOC100242521 LOC18098586 LOC18104012 LOC25484695 LOC123180301 LOC123110115 LOC123189819 LOC123415986 LOC107927305 LOC107886346 LOC111213935 LOC125585316 LOC106390940 LOC8068173 LOC102604898 LOC102623910 LOC100831726 LOC100837285 LOC100839818 LOC107830436 LOC107767865
Function* uncharacterized protein Tetratricopeptide repeat (TPR)-like superfamily protein RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 protein SEMI-ROLLED LEAF 2 uncharacterized LOC101250936 uncharacterized LOC4337703 uncharacterized LOC100192799 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 uncharacterized LOC100242521 uncharacterized LOC18098586 uncharacterized LOC18104012 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3-like RNA polymerase II-associated protein 3-like RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 uncharacterized LOC102623910 RNA polymerase II-associated protein 3-like RNA polymerase II-associated protein 3 RNA polymerase II-associated protein 3 uncharacterized LOC107830436 uncharacterized LOC107767865
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
hvu03018 RNA degradation 2
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 11
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 11
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 2
bna00062 Fatty acid elongation 2
bna01212 Fatty acid metabolism 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 2
bna00062 Fatty acid elongation 2
bna01212 Fatty acid metabolism 2
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 2
bna00062 Fatty acid elongation 2
bna01212 Fatty acid metabolism 2
bna00540 Lipopolysaccharide biosynthesis 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5727369 842097 100808255 100789345 100787266 101250936 4337703 100192799 103849452 103847644 100242521 18098586 18104012 25484695 123180301 123110115 123189819 123415986 107927305 107886346 111213935 125585316 106390940 8068173 102604898 102623910 100831726 100837285 100839818 107830436 107767865
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