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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g325716v5   uncharacterized protein 
 ath-u.5   LIG1   DNA ligase 1 
 gma-u.5   100803989   DNA ligase 1 
 gma-u.5   100783155   DNA ligase 1 
 sly-u.5   101262281   DNA ligase 1 
 osa-u.5   4348965   DNA ligase 1 
 zma-u.5   100383890   DNA ligase 
 bra-r.6   103843415   DNA ligase 1 
 bra-r.6   103871561   DNA ligase 1 
 vvi-u.5   100256907   DNA ligase 1 
 ppo-u.5   7463320   DNA ligase 1 
 mtr-u.5   11410741   DNA ligase 1 
 mtr-u.5   25492370   DNA ligase 1 
 tae-r.2   123122620   DNA ligase 1 
 tae-r.2   123047568   DNA ligase 1 
 tae-r.2   123181261   DNA ligase 1 
 hvu-r.1   123432585   DNA ligase 1 
 ghi-r.1   107887527   DNA ligase 1 
 ghi-r.1   107927137   DNA ligase 1 
 bna-r.1   106416310   DNA ligase 1 
 bna-r.1   106401619   DNA ligase 1-like 
 bna-r.1   106346356   DNA ligase 1 
 sbi-r.1   8067120   DNA ligase 1 
 sot-r.1   102604298   DNA ligase 1 
 cit-r.1   102628869   DNA ligase 1 
 bdi-r.1   100843366   DNA ligase 1 
 nta-r.1   107828011   DNA ligase 1 
 nta-r.1   107775599   DNA ligase 1 

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Top 50 coexpressed genes to CHLRE_07g325716v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_07g325716v5 (cre-r.1 coexpression data)

CoexMap"5728431"


creCHLRE_07g325716v5 | Entrez gene ID : 5728431      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 2 1 1 2 3 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03030 [list] [network] DNA replication (30 genes)
cre03410 [list] [network] Base excision repair (25 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
cre03430 [list] [network] Mismatch repair (15 genes)
GO BP
GO:0006273 [list] [network] lagging strand elongation  (5 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (20 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (132 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (229 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (441 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (4 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (670 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_042922614.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 2,  cyto 2,  pero 2,  cyto_nucl 2,  cyto_pero 2  (predict for XP_042922614.1)
Subcellular
localization
TargetP
other 6  (predict for XP_042922614.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g325716v5
ath-u.5
for
LIG1
gma-u.5
for
100803989
gma-u.5
for
100783155
sly-u.5
for
101262281
osa-u.5
for
4348965
zma-u.5
for
100383890
bra-r.6
for
103843415
bra-r.6
for
103871561
vvi-u.5
for
100256907
ppo-u.5
for
7463320
mtr-u.5
for
11410741
mtr-u.5
for
25492370
tae-r.2
for
123122620
tae-r.2
for
123047568
tae-r.2
for
123181261
hvu-r.1
for
123432585
ghi-r.1
for
107887527
ghi-r.1
for
107927137
bna-r.1
for
106416310
bna-r.1
for
106401619
bna-r.1
for
106346356
sbi-r.1
for
8067120
sot-r.1
for
102604298
cit-r.1
for
102628869
bdi-r.1
for
100843366
nta-r.1
for
107828011
nta-r.1
for
107775599


Ortholog ID: 7020
Species cre ath gma gma sly osa zma bra bra vvi ppo mtr mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_07g325716v5 LIG1 LOC100803989 LOC100783155 LOC101262281 LOC4348965 LOC100383890 LOC103843415 LOC103871561 LOC100256907 LOC7463320 LOC11410741 LOC25492370 LOC123122620 LOC123047568 LOC123181261 LOC123432585 LOC107887527 LOC107927137 LOC106401619 LOC106346356 LOC106420229 LOC8067120 LOC102604298 LOC102628869 LOC100843366 LOC107828011 LOC107775599
Function* uncharacterized protein DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1-like DNA ligase 1 DNA ligase 1-like DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 7
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
cre03410 Base excision repair 4
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03430 Mismatch repair 4
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03430 Mismatch repair 4
gma03440 Homologous recombination 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 7
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly04120 Ubiquitin mediated proteolysis 3
sly03015 mRNA surveillance pathway 2
sly03030 DNA replication 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03008 Ribosome biogenesis in eukaryotes 2
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03013 Nucleocytoplasmic transport 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
vvi03410 Base excision repair 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03430 Mismatch repair 3
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03030 DNA replication 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 7
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03430 Mismatch repair 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5728431 837333 100803989 100783155 101262281 4348965 100383890 103843415 103871561 100256907 7463320 11410741 25492370 123122620 123047568 123181261 123432585 107887527 107927137 106401619 106346356 106420229 8067120 102604298 102628869 100843366 107828011 107775599
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