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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123047568   DNA ligase 1 
 tae-r.2   123181261   DNA ligase 1 
 tae-r.2   123122620   DNA ligase 1 
 hvu-r.1   123432585   DNA ligase 1 
 bdi-r.1   100843366   DNA ligase 1 
 osa-u.5   4348965   DNA ligase 1 
 zma-u.5   100383890   DNA ligase 
 sbi-r.1   8067120   DNA ligase 1 
 ath-u.5   LIG1   DNA ligase 1 
 gma-u.5   100803989   DNA ligase 1 
 gma-u.5   100783155   DNA ligase 1 
 sly-u.5   101262281   DNA ligase 1 
 bra-r.6   103871561   DNA ligase 1 
 bra-r.6   103843415   DNA ligase 1 
 vvi-u.5   100256907   DNA ligase 1 
 ppo-u.5   7463320   DNA ligase 1 
 mtr-u.5   11410741   DNA ligase 1 
 mtr-u.5   25492370   DNA ligase 1 
 ghi-r.1   107927137   DNA ligase 1 
 ghi-r.1   107887527   DNA ligase 1 
 bna-r.1   106346356   DNA ligase 1 
 bna-r.1   106401619   DNA ligase 1-like 
 bna-r.1   106416310   DNA ligase 1 
 sot-r.1   102604298   DNA ligase 1 
 cit-r.1   102628869   DNA ligase 1 
 nta-r.1   107828011   DNA ligase 1 
 nta-r.1   107775599   DNA ligase 1 
 cre-r.1   CHLRE_07g325716v5   uncharacterized protein 

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Top 50 coexpressed genes to 123047568 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123047568 (tae-r.2 coexpression data)

CoexMap"123047568"


taeLOC123047568 | Entrez gene ID : 123047568    
Species tae hvu bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 1 1 1 1 2 1 2 1 1 2 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes03030 [list] [network] DNA replication (163 genes)
taes03410 [list] [network] Base excision repair (163 genes)
taes03420 [list] [network] Nucleotide excision repair (265 genes)
taes03430 [list] [network] Mismatch repair (123 genes)
GO BP
GO:0006273 [list] [network] lagging strand elongation  (16 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (65 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (442 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (883 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1872 genes)  IEA  
GO:0005634 [list] [network] nucleus  (8281 genes)  IEA  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (8 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6662 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (7858 genes)  IEA  
Protein XP_044327090.1 [sequence] [blastp]
XP_044327098.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_044327090.1)
cyto 6,  nucl 4  (predict for XP_044327098.1)
Subcellular
localization
TargetP
other 6  (predict for XP_044327090.1)
other 6  (predict for XP_044327098.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123047568
tae-r.2
for
123181261
tae-r.2
for
123122620
hvu-r.1
for
123432585
bdi-r.1
for
100843366
osa-u.5
for
4348965
zma-u.5
for
100383890
sbi-r.1
for
8067120
ath-u.5
for
LIG1
gma-u.5
for
100803989
gma-u.5
for
100783155
sly-u.5
for
101262281
bra-r.6
for
103871561
bra-r.6
for
103843415
vvi-u.5
for
100256907
ppo-u.5
for
7463320
mtr-u.5
for
11410741
mtr-u.5
for
25492370
ghi-r.1
for
107927137
ghi-r.1
for
107887527
bna-r.1
for
106346356
bna-r.1
for
106401619
bna-r.1
for
106416310
sot-r.1
for
102604298
cit-r.1
for
102628869
nta-r.1
for
107828011
nta-r.1
for
107775599
cre-r.1
for
CHLRE_07g325716v5


Ortholog ID: 7020
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly bra bra vvi ppo mtr mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC123047568 LOC123181261 LOC123122620 LOC123432585 LOC100843366 LOC4348965 LOC100383890 LOC8067120 LIG1 LOC100803989 LOC100783155 LOC101262281 LOC103871561 LOC103843415 LOC100256907 LOC7463320 LOC11410741 LOC25492370 LOC107927137 LOC107887527 LOC106346356 LOC106401619 LOC106420229 LOC102604298 LOC102628869 LOC107828011 LOC107775599 CHLRE_07g325716v5
Function* DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1-like DNA ligase 1-like DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03030 DNA replication 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 7
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03430 Mismatch repair 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03008 Ribosome biogenesis in eukaryotes 2
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03013 Nucleocytoplasmic transport 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03430 Mismatch repair 4
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03430 Mismatch repair 4
gma03440 Homologous recombination 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 7
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly04120 Ubiquitin mediated proteolysis 3
sly03015 mRNA surveillance pathway 2
sly03030 DNA replication 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
vvi03410 Base excision repair 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03430 Mismatch repair 3
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 7
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
cre03410 Base excision repair 4
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123047568 123181261 123122620 123432585 100843366 4348965 100383890 8067120 837333 100803989 100783155 101262281 103871561 103843415 100256907 7463320 11410741 25492370 107927137 107887527 106346356 106401619 106420229 102604298 102628869 107828011 107775599 5728431
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