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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101262281   DNA ligase 1 
 sly-r.6   101262281   DNA ligase 1 
 ath-u.5   LIG1   DNA ligase 1 
 gma-u.5   100783155   DNA ligase 1 
 gma-u.5   100803989   DNA ligase 1 
 vvi-u.5   100256907   DNA ligase 1 
 ppo-u.5   7463320   DNA ligase 1 
 mtr-u.5   25492370   DNA ligase 1 
 mtr-u.5   11410741   DNA ligase 1 
 osa-u.5   4348965   DNA ligase 1 
 zma-u.5   100383890   DNA ligase 

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Top 50 coexpressed genes to 101262281 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101262281 (sly-u.5 coexpression data)

CoexMap"101262281"


slyLOC101262281 | Entrez gene ID : 101262281      
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 1 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03030 [list] [network] DNA replication (43 genes)
sly03410 [list] [network] Base excision repair (52 genes)
sly03420 [list] [network] Nucleotide excision repair (70 genes)
sly03430 [list] [network] Mismatch repair (34 genes)
GO BP
GO:0006273 [list] [network] lagging strand elongation  (5 genes)  IEA  
GO:0071897 [list] [network] DNA biosynthetic process  (21 genes)  IEA  
GO:0006310 [list] [network] DNA recombination  (116 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (281 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003910 [list] [network] DNA ligase (ATP) activity  (5 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004250982.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_004250982.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_004250982.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101262281
sly-r.6
for
101262281
ath-u.5
for
LIG1
gma-u.5
for
100783155
gma-u.5
for
100803989
vvi-u.5
for
100256907
ppo-u.5
for
7463320
mtr-u.5
for
25492370
mtr-u.5
for
11410741
osa-u.5
for
4348965
zma-u.5
for
100383890


Ortholog ID: 7020
Species sly sot nta nta ath gma gma bra bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi cre
Symbol LOC101262281 LOC102604298 LOC107828011 LOC107775599 LIG1 LOC100783155 LOC100803989 LOC103871561 LOC103843415 LOC100256907 LOC7463320 LOC11410741 LOC107927137 LOC107887527 LOC106420229 LOC106401619 LOC102628869 LOC4348965 LOC100383890 LOC123047568 LOC123122620 LOC123432585 LOC8067120 LOC100843366 CHLRE_07g325716v5
Function* DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1-like DNA ligase 1-like DNA ligase 1 DNA ligase 1 DNA ligase DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 DNA ligase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly04120 Ubiquitin mediated proteolysis 3
sly03015 mRNA surveillance pathway 2
sly03030 DNA replication 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 5
ath03430 Mismatch repair 4
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 7
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 4
gma03430 Mismatch repair 4
gma03440 Homologous recombination 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 4
bra03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
vvi03410 Base excision repair 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna03410 Base excision repair 7
bna03420 Nucleotide excision repair 7
bna03430 Mismatch repair 4
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03008 Ribosome biogenesis in eukaryotes 2
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma03013 Nucleocytoplasmic transport 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03030 DNA replication 4
tae03420 Nucleotide excision repair 4
tae03430 Mismatch repair 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 7
hvu03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03430 Mismatch repair 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 7
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
cre03410 Base excision repair 4
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101262281 102604298 107828011 107775599 837333 100783155 100803989 103871561 103843415 100256907 7463320 11410741 107927137 107887527 106420229 106401619 102628869 4348965 100383890 123047568 123122620 123432585 8067120 100843366 5728431
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