ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_03g180200v5	uncharacterized protein
ath-u.5	DWA1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1
gma-u.5	100820024	WD40 domain-containing protin
gma-u.5	100806423	THO complex subunit 6
sly-u.5	101264535	THO complex subunit 6
osa-u.5	4346861	THO complex subunit 6
zma-u.5	103632647	THO complex subunit 6
bra-r.6	103828298	THO complex subunit 6
vvi-u.5	100244028	uncharacterized LOC100244028
ppo-u.5	18101254	THO complex subunit 6
tae-r.2	123121357	THO complex subunit 6
tae-r.2	123111793	THO complex subunit 6
tae-r.2	123103569	THO complex subunit 6
hvu-r.1	123395025	THO complex subunit 6
ghi-r.1	107899953	THO complex subunit 6
ghi-r.1	107895807	THO complex subunit 6
bna-r.1	106352952	THO complex subunit 6
bna-r.1	106390005	THO complex subunit 6-like
sbi-r.1	8055579	THO complex subunit 6
sot-r.1	102594146	THO complex subunit 6
cit-r.1	102619392	THO complex subunit 6
bdi-r.1	100825336	THO complex subunit 6
nta-r.1	107787142	eukaryotic initiation factor 4A-9
nta-r.1	107777567	THO complex subunit 6

Annotation

functional annotation

KEGG

GO BP

GO:0006406 [list] [network] mRNA export from nucleus

(27 genes)

IEA

GO CC

GO:0000346 [list] [network] transcription export complex	(8 genes)	IEA
GO:0000347 [list] [network] THO complex	(8 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042926164.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, nucl_plas 4, chlo 1, cyto 1

(predict for XP_042926164.1)

Subcellular
localization
TargetP

other 9

(predict for XP_042926164.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_03g180200v5	ath-u.5 for DWA1	gma-u.5 for 100820024	gma-u.5 for 100806423	sly-u.5 for 101264535	osa-u.5 for 4346861	zma-u.5 for 103632647	bra-r.6 for 103828298	vvi-u.5 for 100244028	ppo-u.5 for 18101254	tae-r.2 for 123121357	tae-r.2 for 123111793	tae-r.2 for 123103569	hvu-r.1 for 123395025	ghi-r.1 for 107899953	ghi-r.1 for 107895807	bna-r.1 for 106352952	bna-r.1 for 106390005	sbi-r.1 for 8055579	sot-r.1 for 102594146	cit-r.1 for 102619392	bdi-r.1 for 100825336	nta-r.1 for 107787142	nta-r.1 for 107777567

Ortholog

Ortholog ID: 10661

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

DWA1

Function^*

uncharacterized protein

DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1

WD40 domain-containing protin

THO complex subunit 6

uncharacterized LOC100244028

THO complex subunit 6

THO complex subunit 6-like

THO complex subunit 6

eukaryotic initiation factor 4A-9

THO complex subunit 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	5
gma00513	Various types of N-glycan biosynthesis	5
gma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6
gma03013	Nucleocytoplasmic transport	3
gma03015	mRNA surveillance pathway	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04148	Efferocytosis	2
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03010	Ribosome	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	3
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	7
tae03040	Spliceosome	7
tae03015	mRNA surveillance pathway	4
tae04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	7
tae03040	Spliceosome	7
tae03015	mRNA surveillance pathway	4
tae04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	9
tae03040	Spliceosome	9
tae03015	mRNA surveillance pathway	6
tae00040	Pentose and glucuronate interconversions	2
tae00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00410	beta-Alanine metabolism	2
ghi00640	Propanoate metabolism	2
ghi01200	Carbon metabolism	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	4
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00410	beta-Alanine metabolism	2
ghi00640	Propanoate metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4
bna03083	Polycomb repressive complex	4
bna03013	Nucleocytoplasmic transport	3
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6
bna03083	Polycomb repressive complex	6
bna03013	Nucleocytoplasmic transport	3
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03018	RNA degradation	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot03013	Nucleocytoplasmic transport	2
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

5728790

816462

100820024

100806423

101264535

4346861

103632647

103828298

100244028

18101254

123121357

123111793

123103569

123395025

107899953

107895807

106352952

106390005

8055579

102594146

102619392

100825336

107787142

107777567

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_03g180200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g180200v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta	mtr
Paralog	1	1	2	1	1	1	1	1	1	3	1	2	2	1	1	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_03g180200v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_03g180200v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**