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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_09g401367v5   uncharacterized protein 
 ath-u.5   AT5G42470   BRCA1-A complex subunit BRE-like protein 
 gma-u.5   100814793   BRE domain-containing protein 
 gma-u.5   100794341   BRISC and BRCA1-A complex member 2 
 sly-u.5   101264320   uncharacterized LOC101264320 
 osa-u.5   4342073   uncharacterized LOC4342073 
 zma-u.5   100282640   protein BRE 
 bra-r.6   103828022   BRISC and BRCA1-A complex member 2 
 vvi-u.5   100264259   uncharacterized LOC100264259 
 ppo-u.5   7490649   uncharacterized LOC7490649 
 ppo-u.5   7493974   uncharacterized LOC7493974 
 mtr-u.5   11414408   BRISC and BRCA1-A complex member 2 
 tae-r.2   123165304   BRISC and BRCA1-A complex member 2 
 tae-r.2   123157368   BRISC and BRCA1-A complex member 2 
 tae-r.2   123148295   BRISC and BRCA1-A complex member 2 
 hvu-r.1   123408748   BRISC and BRCA1-A complex member 2 
 ghi-r.1   121205059   BRISC and BRCA1-A complex member 2 
 ghi-r.1   107918164   BRISC and BRCA1-A complex member 2 
 bna-r.1   106349523   BRISC and BRCA1-A complex member 2 
 bna-r.1   111205105   BRISC and BRCA1-A complex member 2 
 sbi-r.1   110431319   BRCA1-A complex subunit BRE 
 sot-r.1   102599655   BRCA1-A complex subunit BRE 
 cit-r.1   102631455   uncharacterized LOC102631455 
 bdi-r.1   100839893   BRISC and BRCA1-A complex member 2 
 nta-r.1   107815757   uncharacterized LOC107815757 

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Top 50 coexpressed genes to CHLRE_09g401367v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_09g401367v5 (cre-r.1 coexpression data)

CoexMap"66054790"


creCHLRE_09g401367v5 | Entrez gene ID : 66054790    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 1 2 1 3 1 2 2 1 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006302 [list] [network] double-strand break repair  (115 genes)  IEA  
GO CC
GO:0070552 [list] [network] BRISC complex  (5 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (7 genes)  IEA  
GO MF
Protein XP_042921396.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl_plas 1,  plas 1,  cyto_nucl 1,  cysk_plas 1,  mito_plas 1  (predict for XP_042921396.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_042921396.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_09g401367v5
ath-u.5
for
AT5G42470
gma-u.5
for
100814793
gma-u.5
for
100794341
sly-u.5
for
101264320
osa-u.5
for
4342073
zma-u.5
for
100282640
bra-r.6
for
103828022
vvi-u.5
for
100264259
ppo-u.5
for
7490649
ppo-u.5
for
7493974
mtr-u.5
for
11414408
tae-r.2
for
123165304
tae-r.2
for
123157368
tae-r.2
for
123148295
hvu-r.1
for
123408748
ghi-r.1
for
121205059
ghi-r.1
for
107918164
bna-r.1
for
106349523
bna-r.1
for
111205105
sbi-r.1
for
110431319
sot-r.1
for
102599655
cit-r.1
for
102631455
bdi-r.1
for
100839893
nta-r.1
for
107815757


Ortholog ID: 10350
Species cre ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta
Symbol CHLRE_09g401367v5 AT5G42470 LOC100814793 LOC100794341 LOC101264320 LOC4342073 LOC100282640 LOC103828022 LOC100264259 LOC7490649 LOC7493974 LOC11414408 LOC123165304 LOC123157368 LOC123148295 LOC123408748 LOC121205059 LOC107918164 LOC106349523 LOC111205105 LOC110431319 LOC102599655 LOC102631455 LOC100839893 LOC107815757
Function* uncharacterized protein BRCA1-A complex subunit BRE-like protein BRE domain-containing protein BRISC and BRCA1-A complex member 2 uncharacterized LOC101264320 uncharacterized LOC4342073 protein BRE BRISC and BRCA1-A complex member 2 uncharacterized LOC100264259 uncharacterized LOC7490649 uncharacterized LOC7493974 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRISC and BRCA1-A complex member 2 BRCA1-A complex subunit BRE BRCA1-A complex subunit BRE uncharacterized LOC102631455 BRISC and BRCA1-A complex member 2 uncharacterized LOC107815757
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00260 Glycine, serine and threonine metabolism 2
sly00470 D-Amino acid metabolism 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 10
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr04144 Endocytosis 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae03440 Homologous recombination 3
tae00270 Cysteine and methionine metabolism 3
tae00920 Sulfur metabolism 3
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae00010 Glycolysis / Gluconeogenesis 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae00270 Cysteine and methionine metabolism 3
tae00920 Sulfur metabolism 3
tae04122 Sulfur relay system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 7
bna04144 Endocytosis 6
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 6
bna03050 Proteasome 3
bna00062 Fatty acid elongation 2
bna01212 Fatty acid metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 3
sot00190 Oxidative phosphorylation 2
sot03010 Ribosome 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
cit00010 Glycolysis / Gluconeogenesis 2
cit00190 Oxidative phosphorylation 2
cit04145 Phagosome 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66054790 834254 100814793 100794341 101264320 4342073 100282640 103828022 100264259 7490649 7493974 11414408 123165304 123157368 123148295 123408748 121205059 107918164 106349523 111205105 110431319 102599655 102631455 100839893 107815757
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