ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100264259	uncharacterized LOC100264259
vvi-r.5	100264259	uncharacterized LOC100264259
vvi-m.5	100264259	uncharacterized LOC100264259
ath-u.5	AT5G42470	BRCA1-A complex subunit BRE-like protein
gma-u.5	100814793	BRE domain-containing protein
gma-u.5	100794341	BRISC and BRCA1-A complex member 2
bra-r.6	103828022	BRISC and BRCA1-A complex member 2
ppo-u.5	7493974	uncharacterized LOC7493974
ppo-u.5	7490649	uncharacterized LOC7490649
mtr-u.5	11414408	BRISC and BRCA1-A complex member 2
ghi-r.1	121205059	BRISC and BRCA1-A complex member 2
ghi-r.1	107918164	BRISC and BRCA1-A complex member 2
bna-r.1	111205105	BRISC and BRCA1-A complex member 2
bna-r.1	106349523	BRISC and BRCA1-A complex member 2
cit-r.1	102631455	uncharacterized LOC102631455
sly-u.5	101264320	uncharacterized LOC101264320
sot-r.1	102599655	BRCA1-A complex subunit BRE
nta-r.1	107815757	uncharacterized LOC107815757
osa-u.5	4342073	uncharacterized LOC4342073
zma-u.5	100282640	protein BRE
tae-r.2	123165304	BRISC and BRCA1-A complex member 2
tae-r.2	123157368	BRISC and BRCA1-A complex member 2
tae-r.2	123148295	BRISC and BRCA1-A complex member 2
hvu-r.1	123408748	BRISC and BRCA1-A complex member 2
sbi-r.1	110431319	BRCA1-A complex subunit BRE
bdi-r.1	100839893	BRISC and BRCA1-A complex member 2
cre-r.1	CHLRE_09g401367v5	uncharacterized protein

Annotation

functional annotation

KEGG

vvi03440 [list] [network] Homologous recombination (47 genes)

GO BP

GO:0006302 [list] [network] double-strand break repair

(89 genes)

IEA

GO CC

GO:0070552 [list] [network] BRISC complex	(3 genes)	IEA
GO:0070531 [list] [network] BRCA1-A complex	(5 genes)	IEA

GO MF

Protein

XP_002275256.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 2, cysk_nucl 1, cyto 1, extr 1, mito 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_002275256.1)

Subcellular
localization
TargetP

other 6, scret 3

(predict for XP_002275256.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100264259	vvi-r.5 for 100264259	vvi-m.5 for 100264259	ath-u.5 for AT5G42470	gma-u.5 for 100814793	gma-u.5 for 100794341	bra-r.6 for 103828022	ppo-u.5 for 7493974	ppo-u.5 for 7490649	mtr-u.5 for 11414408	ghi-r.1 for 121205059	ghi-r.1 for 107918164	bna-r.1 for 111205105	bna-r.1 for 106349523	cit-r.1 for 102631455	sly-u.5 for 101264320	sot-r.1 for 102599655	nta-r.1 for 107815757	osa-u.5 for 4342073	zma-u.5 for 100282640	tae-r.2 for 123165304	tae-r.2 for 123157368	tae-r.2 for 123148295	hvu-r.1 for 123408748	sbi-r.1 for 110431319	bdi-r.1 for 100839893	cre-r.1 for CHLRE_09g401367v5

Ortholog

Ortholog ID: 10350

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100264259

BRCA1-A complex subunit BRE-like protein

BRE domain-containing protein

BRISC and BRCA1-A complex member 2

uncharacterized LOC7493974

uncharacterized LOC7490649

BRISC and BRCA1-A complex member 2

uncharacterized LOC102631455

uncharacterized LOC101264320

BRCA1-A complex subunit BRE

uncharacterized LOC107815757

uncharacterized LOC4342073

protein BRE

BRISC and BRCA1-A complex member 2

BRCA1-A complex subunit BRE

BRISC and BRCA1-A complex member 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma03440	Homologous recombination	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2
mtr04144	Endocytosis	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00790	Folate biosynthesis	2
ghi01240	Biosynthesis of cofactors	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	6
bna03050	Proteasome	3
bna00062	Fatty acid elongation	2
bna01212	Fatty acid metabolism	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	7
bna04144	Endocytosis	6
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	5
cit00010	Glycolysis / Gluconeogenesis	2
cit00190	Oxidative phosphorylation	2
cit04145	Phagosome	2
cit01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00260	Glycine, serine and threonine metabolism	2
sly00470	D-Amino acid metabolism	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	3
sot00190	Oxidative phosphorylation	2
sot03010	Ribosome	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	10
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae03440	Homologous recombination	3
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3
tae04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae00010	Glycolysis / Gluconeogenesis	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae00270	Cysteine and methionine metabolism	3
tae00920	Sulfur metabolism	3
tae04122	Sulfur relay system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3

Expression

Expression pattern

Entrez Gene ID^*

100264259

834254

100814793

100794341

103828022

7493974

7490649

11414408

121205059

107918164

111205105

106349523

102631455

101264320

102599655

107815757

4342073

100282640

123165304

123157368

123148295

123408748

110431319

100839893

66054790

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100264259 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100264259 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	2	1	2	1	2	2	1	1	1	1	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100264259 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100264259 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**