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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g543850v5   uncharacterized protein 
 ath-u.5   CCT   RNA polymerase II transcription mediator 
 gma-u.5   100782672   mediator of RNA polymerase II transcription subunit 12 
 gma-u.5   100806985   mediator of RNA polymerase II transcription subunit 12 
 gma-u.5   100811040   mediator of RNA polymerase II transcription subunit 12 
 sly-u.5   101246089   mediator of RNA polymerase II transcription subunit 12 
 osa-u.5   4349313   mediator of RNA polymerase II transcription subunit 12 
 osa-u.5   4344116   mediator of RNA polymerase II transcription subunit 12 
 zma-u.5   103630556   mediator of RNA polymerase II transcription subunit 12-like 
 zma-u.5   100384108   uncharacterized LOC100384108 
 bra-r.6   103858870   mediator of RNA polymerase II transcription subunit 12 
 bra-r.6   103836919   mediator of RNA polymerase II transcription subunit 12 
 vvi-u.5   100263628   mediator of RNA polymerase II transcription subunit 12 
 ppo-u.5   18105225   mediator of RNA polymerase II transcription subunit 12 
 ppo-u.5   7494075   mediator of RNA polymerase II transcription subunit 12 
 mtr-u.5   11444032   mediator of RNA polymerase II transcription subunit 12 
 mtr-u.5   11442155   mediator of RNA polymerase II transcription subunit 12 
 tae-r.2   123093877   mediator of RNA polymerase II transcription subunit 12 
 tae-r.2   123099099   mediator of RNA polymerase II transcription subunit 12 
 tae-r.2   123106058   mediator of RNA polymerase II transcription subunit 12 
 hvu-r.1   123449956   mediator of RNA polymerase II transcription subunit 12 
 ghi-r.1   121210897   mediator of RNA polymerase II transcription subunit 12 
 ghi-r.1   107943228   mediator of RNA polymerase II transcription subunit 12 
 ghi-r.1   107923774   mediator of RNA polymerase II transcription subunit 12 
 bna-r.1   125592312   mediator of RNA polymerase II transcription subunit 12-like 
 bna-r.1   106438592   mediator of RNA polymerase II transcription subunit 12 
 bna-r.1   106434944   mediator of RNA polymerase II transcription subunit 12 
 sbi-r.1   8059520   mediator of RNA polymerase II transcription subunit 12 
 sot-r.1   102594933   mediator of RNA polymerase II transcription subunit 12 
 cit-r.1   102625411   mediator of RNA polymerase II transcription subunit 12 
 cit-r.1   127898599   mediator of RNA polymerase II transcription subunit 12-like 
 bdi-r.1   100846378   mediator of RNA polymerase II transcription subunit 12 
 nta-r.1   107789063   mediator of RNA polymerase II transcription subunit 12-like 
 nta-r.1   107827645   mediator of RNA polymerase II transcription subunit 12 

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Top 50 coexpressed genes to CHLRE_12g543850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g543850v5 (cre-r.1 coexpression data)

CoexMap"66055738"


creCHLRE_12g543850v5 | Entrez gene ID : 66055738    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 3 1 2 2 2 1 2 2 3 1 3 3 1 1 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (190 genes)  IEA  
GO CC
GO:0016592 [list] [network] mediator complex  (16 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (73 genes)  IEA  
Protein XP_042919151.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  chlo 1,  E.R. 1,  nucl 1,  pero 1,  chlo_mito 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_042919151.1)
Subcellular
localization
TargetP
other 9  (predict for XP_042919151.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g543850v5
ath-u.5
for
CCT
gma-u.5
for
100782672
gma-u.5
for
100806985
gma-u.5
for
100811040
sly-u.5
for
101246089
osa-u.5
for
4349313
osa-u.5
for
4344116
zma-u.5
for
103630556
zma-u.5
for
100384108
bra-r.6
for
103858870
bra-r.6
for
103836919
vvi-u.5
for
100263628
ppo-u.5
for
18105225
ppo-u.5
for
7494075
mtr-u.5
for
11444032
mtr-u.5
for
11442155
tae-r.2
for
123093877
tae-r.2
for
123099099
tae-r.2
for
123106058
hvu-r.1
for
123449956
ghi-r.1
for
121210897
ghi-r.1
for
107943228
ghi-r.1
for
107923774
bna-r.1
for
125592312
bna-r.1
for
106438592
bna-r.1
for
106434944
sbi-r.1
for
8059520
sot-r.1
for
102594933
cit-r.1
for
102625411
cit-r.1
for
127898599
bdi-r.1
for
100846378
nta-r.1
for
107789063
nta-r.1
for
107827645


Ortholog ID: 5345
Species cre ath gma gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sot cit cit bdi nta nta
Symbol CHLRE_12g543850v5 CCT LOC100782672 LOC100806985 LOC100811040 LOC101246089 LOC4349313 LOC4344116 LOC103630556 LOC100384108 LOC103858870 LOC103836919 LOC100263628 LOC18105225 LOC7494075 LOC11444032 LOC11442155 LOC123093877 LOC123099099 LOC123106058 LOC123449956 LOC121210897 LOC107943228 LOC107923774 LOC106438592 LOC106434944 LOC106388708 LOC8059520 LOC102594933 LOC102625411 LOC127898599 LOC100846378 LOC107789063 LOC107827645
Function* uncharacterized protein RNA polymerase II transcription mediator mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like uncharacterized LOC100384108 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12 mediator of RNA polymerase II transcription subunit 12-like mediator of RNA polymerase II transcription subunit 12
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi04145 Phagosome 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi04145 Phagosome 3
ghi00310 Lysine degradation 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 4
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66055738 827954 100782672 100806985 100811040 101246089 4349313 4344116 103630556 100384108 103858870 103836919 100263628 18105225 7494075 11444032 11442155 123093877 123099099 123106058 123449956 121210897 107943228 107923774 106438592 106434944 106388708 8059520 102594933 102625411 127898599 100846378 107789063 107827645
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