ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106438592	mediator of RNA polymerase II transcription subunit 12
bna-r.1	106388708	mediator of RNA polymerase II transcription subunit 12-like
bna-r.1	106434944	mediator of RNA polymerase II transcription subunit 12
bna-r.1	125592312	mediator of RNA polymerase II transcription subunit 12-like
bra-r.6	103836919	mediator of RNA polymerase II transcription subunit 12
bra-r.6	103858870	mediator of RNA polymerase II transcription subunit 12
ath-u.5	CCT	RNA polymerase II transcription mediator
ghi-r.1	107911520	mediator of RNA polymerase II transcription subunit 12
ghi-r.1	121210897	mediator of RNA polymerase II transcription subunit 12
ghi-r.1	107923774	mediator of RNA polymerase II transcription subunit 12
cit-r.1	102625411	mediator of RNA polymerase II transcription subunit 12
cit-r.1	127898599	mediator of RNA polymerase II transcription subunit 12-like
gma-u.5	100811040	mediator of RNA polymerase II transcription subunit 12
gma-u.5	100806985	mediator of RNA polymerase II transcription subunit 12
gma-u.5	100782672	mediator of RNA polymerase II transcription subunit 12
vvi-u.5	100263628	mediator of RNA polymerase II transcription subunit 12
ppo-u.5	7494075	mediator of RNA polymerase II transcription subunit 12
ppo-u.5	18105225	mediator of RNA polymerase II transcription subunit 12
mtr-u.5	11444032	mediator of RNA polymerase II transcription subunit 12
mtr-u.5	11442155	mediator of RNA polymerase II transcription subunit 12
sly-u.5	101246089	mediator of RNA polymerase II transcription subunit 12
sot-r.1	102594933	mediator of RNA polymerase II transcription subunit 12
nta-r.1	107827645	mediator of RNA polymerase II transcription subunit 12
nta-r.1	107789063	mediator of RNA polymerase II transcription subunit 12-like
osa-u.5	4344116	mediator of RNA polymerase II transcription subunit 12
osa-u.5	4349313	mediator of RNA polymerase II transcription subunit 12
zma-u.5	103630556	mediator of RNA polymerase II transcription subunit 12-like
zma-u.5	100384108	uncharacterized LOC100384108
tae-r.2	123093877	mediator of RNA polymerase II transcription subunit 12
tae-r.2	123099099	mediator of RNA polymerase II transcription subunit 12
tae-r.2	123106058	mediator of RNA polymerase II transcription subunit 12
hvu-r.1	123449956	mediator of RNA polymerase II transcription subunit 12
sbi-r.1	8059520	mediator of RNA polymerase II transcription subunit 12
bdi-r.1	100846378	mediator of RNA polymerase II transcription subunit 12
cre-r.1	CHLRE_12g543850v5	uncharacterized protein

Top 50 coexpressed genes to 106438592 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106438592 (bna-r.1 coexpression data)

CoexMap"106438592"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(1371 genes)

IEA

GO CC

GO:0016592 [list] [network] mediator complex

(98 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity

(379 genes)

IEA

Protein

XP_013735269.2 [sequence] [blastp]
XP_013735270.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, E.R. 1, chlo_mito 1	(predict for XP_013735269.2)
nucl 4, chlo 3, E.R. 1, chlo_mito 1	(predict for XP_013735270.2)

Subcellular
localization
TargetP

chlo 7	(predict for XP_013735269.2)
chlo 7	(predict for XP_013735270.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106438592	bna-r.1 for 106388708	bna-r.1 for 106434944	bna-r.1 for 125592312	bra-r.6 for 103836919	bra-r.6 for 103858870	ath-u.5 for CCT	ghi-r.1 for 107911520	ghi-r.1 for 121210897	ghi-r.1 for 107923774	cit-r.1 for 102625411	cit-r.1 for 127898599	gma-u.5 for 100811040	gma-u.5 for 100806985	gma-u.5 for 100782672	vvi-u.5 for 100263628	ppo-u.5 for 7494075	ppo-u.5 for 18105225	mtr-u.5 for 11444032	mtr-u.5 for 11442155	sly-u.5 for 101246089	sot-r.1 for 102594933	nta-r.1 for 107827645	nta-r.1 for 107789063	osa-u.5 for 4344116	osa-u.5 for 4349313	zma-u.5 for 103630556	zma-u.5 for 100384108	tae-r.2 for 123093877	tae-r.2 for 123099099	tae-r.2 for 123106058	hvu-r.1 for 123449956	sbi-r.1 for 8059520	bdi-r.1 for 100846378	cre-r.1 for CHLRE_12g543850v5

Ortholog

Ortholog ID: 5345

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CCT

Function^*