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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g581650v5   uncharacterized protein 
 ath-u.5   RPL12-A   ribosomal protein L12-A 
 ath-u.5   RPL12-C   ribosomal protein L12-C 
 gma-u.5   100800454   50S ribosomal protein L12, chloroplastic 
 gma-u.5   100779891   50S ribosomal protein L12, chloroplastic 
 sly-u.5   101252943   large ribosomal subunit protein bL12c 
 sly-u.5   101253247   large ribosomal subunit protein bL12c 
 osa-u.5   9271252   50S ribosomal protein L12, chloroplastic-like 
 osa-u.5   4339648   large ribosomal subunit protein bL12c-like 
 zma-u.5   107275245   50S ribosomal protein L7/L12, chloroplastic-like 
 zma-u.5   100277261   50S ribosomal protein L12, chloroplastic 
 bra-r.6   103875187   50S ribosomal protein L12-1, chloroplastic 
 bra-r.6   103854212   50S ribosomal protein L12-1, chloroplastic 
 vvi-u.5   100257626   large ribosomal subunit protein bL12c 
 ppo-u.5   7496838   50S ribosomal protein L12, chloroplastic 
 mtr-u.5   25495155   50S ribosomal protein L12, chloroplastic 
 tae-r.2   123061654   50S ribosomal protein L12-1, chloroplastic 
 tae-r.2   123078726   50S ribosomal protein L12-2, chloroplastic 
 tae-r.2   123068809   50S ribosomal protein L12, chloroplastic 
 hvu-r.1   123450868   50S ribosomal protein L12, chloroplastic-like 
 hvu-r.1   123444023   50S ribosomal protein L12-1, chloroplastic 
 ghi-r.1   121220137   50S ribosomal protein L12, chloroplastic 
 ghi-r.1   107949073   50S ribosomal protein L12, chloroplastic 
 ghi-r.1   121231869   50S ribosomal protein L12, chloroplastic 
 bna-r.1   125589760   50S ribosomal protein L12-3, chloroplastic-like 
 bna-r.1   125589759   50S ribosomal protein L12-1, chloroplastic-like 
 sbi-r.1   8060137   50S ribosomal protein L12, chloroplastic 
 sot-r.1   102594485   50S ribosomal protein L12, chloroplastic 
 sot-r.1   102594809   50S ribosomal protein L12, chloroplastic-like 
 cit-r.1   102612026   50S ribosomal protein L12, chloroplastic 
 bdi-r.1   100846704   50S ribosomal protein L12-1, chloroplastic 
 nta-r.1   107782092   large ribosomal subunit protein bL12c-like 
 nta-r.1   107777061   large ribosomal subunit protein bL12c-like 
 nta-r.1   107768292   50S ribosomal protein L12, chloroplastic 

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Top 50 coexpressed genes to CHLRE_13g581650v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g581650v5 (cre-r.1 coexpression data)

CoexMap"66056007"


creCHLRE_13g581650v5 | Entrez gene ID : 66056007    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 2 2 2 2 1 1 1 3 2 3 2 1 2 1 1 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03010 [list] [network] Ribosome (149 genes)
GO BP
GO:0006412 [list] [network] translation  (268 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (168 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (164 genes)  IEA  
Protein XP_042917553.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 5,  chlo_mito 5  (predict for XP_042917553.1)
Subcellular
localization
TargetP
mito 5,  chlo 3  (predict for XP_042917553.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g581650v5
ath-u.5
for
RPL12-A
ath-u.5
for
RPL12-C
gma-u.5
for
100800454
gma-u.5
for
100779891
sly-u.5
for
101252943
sly-u.5
for
101253247
osa-u.5
for
9271252
osa-u.5
for
4339648
zma-u.5
for
107275245
zma-u.5
for
100277261
bra-r.6
for
103875187
bra-r.6
for
103854212
vvi-u.5
for
100257626
ppo-u.5
for
7496838
mtr-u.5
for
25495155
tae-r.2
for
123061654
tae-r.2
for
123078726
tae-r.2
for
123068809
hvu-r.1
for
123450868
hvu-r.1
for
123444023
ghi-r.1
for
121220137
ghi-r.1
for
107949073
ghi-r.1
for
121231869
bna-r.1
for
125589760
bna-r.1
for
125589759
sbi-r.1
for
8060137
sot-r.1
for
102594485
sot-r.1
for
102594809
cit-r.1
for
102612026
bdi-r.1
for
100846704
nta-r.1
for
107782092
nta-r.1
for
107777061
nta-r.1
for
107768292


Ortholog ID: 3232
Species cre ath ath gma gma sly sly osa osa zma zma bra bra bra vvi ppo mtr tae tae tae hvu hvu ghi ghi ghi bna bna bna sbi sot sot cit bdi nta nta nta
Symbol CHLRE_13g581650v5 RPL12-A RPL12-C LOC100800454 LOC100779891 LOC101252943 LOC101253247 LOC9271252 LOC4339648 LOC107275245 LOC100277261 LOC103875187 LOC103837006 LOC103875188 LOC100257626 LOC7496838 LOC25495155 LOC123078726 LOC123070280 LOC123183182 LOC123450868 LOC123444023 LOC121220137 LOC107949073 LOC107926542 LOC125589760 LOC106382144 LOC106401675 LOC8060137 LOC102594485 LOC102594809 LOC102612026 LOC100846704 LOC107782092 LOC107777061 LOC107768292
Function* uncharacterized protein ribosomal protein L12-A ribosomal protein L12-C 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic large ribosomal subunit protein bL12c large ribosomal subunit protein bL12c 50S ribosomal protein L12, chloroplastic-like large ribosomal subunit protein bL12c-like 50S ribosomal protein L7/L12, chloroplastic-like 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12-3, chloroplastic 50S ribosomal protein L12-3, chloroplastic large ribosomal subunit protein bL12c 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12-2, chloroplastic 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic-like 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12-3, chloroplastic-like 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12-1, chloroplastic-like 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic-like 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12-1, chloroplastic large ribosomal subunit protein bL12c-like large ribosomal subunit protein bL12c-like 50S ribosomal protein L12, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma04626 Plant-pathogen interaction 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00190 Oxidative phosphorylation 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi00860 Porphyrin metabolism 7
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66056007 822403 822405 100800454 100779891 101252943 101253247 9271252 4339648 107275245 100277261 103875187 103837006 103875188 100257626 7496838 25495155 123078726 123070280 123183182 123450868 123444023 121220137 107949073 107926542 125589760 106382144 106401675 8060137 102594485 102594809 102612026 100846704 107782092 107777061 107768292
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