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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121220137   50S ribosomal protein L12, chloroplastic 
 ath-u.5   RPL12-A   ribosomal protein L12-A 
 ath-u.5   RPL12-C   ribosomal protein L12-C 
 gma-u.5   100779891   50S ribosomal protein L12, chloroplastic 
 gma-u.5   100800454   50S ribosomal protein L12, chloroplastic 
 vvi-u.5   100257626   large ribosomal subunit protein bL12c 
 ppo-u.5   7496838   50S ribosomal protein L12, chloroplastic 
 mtr-u.5   25495155   50S ribosomal protein L12, chloroplastic 
 sly-u.5   101253247   large ribosomal subunit protein bL12c 
 sly-u.5   101252943   large ribosomal subunit protein bL12c 
 osa-u.5   9271252   50S ribosomal protein L12, chloroplastic-like 
 osa-u.5   4339648   large ribosomal subunit protein bL12c-like 
 zma-u.5   107275245   50S ribosomal protein L7/L12, chloroplastic-like 
 zma-u.5   100277261   50S ribosomal protein L12, chloroplastic 

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Top 50 coexpressed genes to 121220137 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121220137 (ghi-r.1 coexpression data)

CoexMap"121220137"


ghiLOC121220137 | Entrez gene ID : 121220137    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03010 [list] [network] Ribosome (2429 genes)
GO BP
GO:0006412 [list] [network] translation  (1487 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (1110 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (1075 genes)  IEA  
Protein XP_040955310.1 [sequence] [blastp]
XP_040955311.1 [sequence] [blastp]
XP_040955312.1 [sequence] [blastp]
XP_040955313.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_040955310.1)
chlo 10  (predict for XP_040955311.1)
chlo 10  (predict for XP_040955312.1)
chlo 10  (predict for XP_040955313.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_040955310.1)
chlo 9  (predict for XP_040955311.1)
chlo 9  (predict for XP_040955312.1)
chlo 9  (predict for XP_040955313.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121220137
ath-u.5
for
RPL12-A
ath-u.5
for
RPL12-C
gma-u.5
for
100779891
gma-u.5
for
100800454
vvi-u.5
for
100257626
ppo-u.5
for
7496838
mtr-u.5
for
25495155
sly-u.5
for
101253247
sly-u.5
for
101252943
osa-u.5
for
9271252
osa-u.5
for
4339648
zma-u.5
for
107275245
zma-u.5
for
100277261


Ortholog ID: 3232
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi bdi cre
Symbol LOC107926542 LOC107949073 RPL12-A LOC103837006 LOC103875187 LOC125589760 LOC106382144 LOC102612026 LOC100779891 LOC100800454 LOC100257626 LOC7496838 LOC25495155 LOC101252943 LOC101253247 LOC102594485 LOC102594809 LOC107777061 LOC107782092 LOC4339648 LOC9271252 LOC100277261 LOC107275245 LOC123078726 LOC123070280 LOC123444023 LOC123450868 LOC8060137 LOC100846704 CHLRE_13g581650v5
Function* 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic ribosomal protein L12-A 50S ribosomal protein L12-3, chloroplastic 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12-3, chloroplastic-like 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic large ribosomal subunit protein bL12c 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic large ribosomal subunit protein bL12c large ribosomal subunit protein bL12c 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12, chloroplastic-like large ribosomal subunit protein bL12c-like large ribosomal subunit protein bL12c-like large ribosomal subunit protein bL12c-like 50S ribosomal protein L12, chloroplastic-like 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L7/L12, chloroplastic-like 50S ribosomal protein L12-2, chloroplastic 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12-1, chloroplastic 50S ribosomal protein L12, chloroplastic-like 50S ribosomal protein L12, chloroplastic 50S ribosomal protein L12-1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
bna00860 Porphyrin metabolism 4
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma04626 Plant-pathogen interaction 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 11
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr00190 Oxidative phosphorylation 2
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 15
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi00860 Porphyrin metabolism 7
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107926542 107949073 822403 103837006 103875187 125589760 106382144 102612026 100779891 100800454 100257626 7496838 25495155 101252943 101253247 102594485 102594809 107777061 107782092 4339648 9271252 100277261 107275245 123078726 123070280 123444023 123450868 8060137 100846704 66056007
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