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Orthologous genes in OrthoFinder**

Species Gene Description
 osa-e.1   4334408   5'-3' exoribonuclease 4 
 osa-u.5   4334408   5'-3' exoribonuclease 4 
 osa-r.6   4334408   5'-3' exoribonuclease 4 
 osa-m.8   4334408   5'-3' exoribonuclease 4 
 osa-u.5   4324952   5'-3' exoribonuclease 3 
 osa-u.5   4329368   5'-3' exoribonuclease 2 
 tae-r.2   123184528   5'-3' exoribonuclease 3 
 hvu-r.1   123400127   5'-3' exoribonuclease 3-like 
 hvu-r.1   123444770   5'-3' exoribonuclease 3-like 
 hvu-r.1   123452664   5'-3' exoribonuclease 4-like 
 bdi-r.1   100835512   5'-3' exoribonuclease 3 
 bdi-r.1   100823403   5'-3' exoribonuclease 4-like 
 zma-u.5   103649964   5'-3' exoribonuclease 3 
 zma-u.5   100384297   5'-3' exoribonuclease 4 
 zma-u.5   103641862   5'-3' exoribonuclease 4 
 sbi-r.1   8085812   5'-3' exoribonuclease 3 
 sbi-r.1   8083058   5'-3' exoribonuclease 4 
 sbi-r.1   8058573   5'-3' exoribonuclease 2 
 ath-u.5   XRN2   exoribonuclease 2 
 ath-u.5   XRN4   exoribonuclease 4 
 ath-u.5   XRN3   5'-3' exoribonuclease 3 
 gma-u.5   100817715   5'-3' exoribonuclease 4 
 gma-u.5   100793385   5'-3' exoribonuclease 4 
 sly-u.5   101248085   5'-3' exoribonuclease 3-like 
 sly-u.5   XRN4   protein ETHYLENE-INSENSITIVE5 
 sly-u.5   101258556   5'-3' exoribonuclease 3 
 bra-r.6   103838732   5'-3' exoribonuclease 4 
 bra-r.6   103828020   5'-3' exoribonuclease 2 
 bra-r.6   103852968   5'-3' exoribonuclease 3 
 vvi-u.5   100263222   5'-3' exoribonuclease 3 
 vvi-u.5   100253751   5'-3' exoribonuclease 4 
 vvi-u.5   100260845   5'-3' exoribonuclease 3 
 ppo-u.5   7493956   5'-3' exoribonuclease 3 
 ppo-u.5   18110978   5'-3' exoribonuclease 4 
 ppo-u.5   18104156   5'-3' exoribonuclease 4 
 mtr-u.5   112416443   5'-3' exoribonuclease 3 
 mtr-u.5   112418725   5'-3' exoribonuclease 3 
 mtr-u.5   112421174   5'-3' exoribonuclease 3 
 ghi-r.1   107943427   5'-3' exoribonuclease 3 
 ghi-r.1   107901512   5'-3' exoribonuclease 4 
 ghi-r.1   107902649   5'-3' exoribonuclease 3 
 bna-r.1   106390968   5'-3' exoribonuclease 3 
 bna-r.1   106397301   5'-3' exoribonuclease 3-like 
 bna-r.1   111215767   5'-3' exoribonuclease 4 
 sot-r.1   102589619   5'-3' exoribonuclease 3-like 
 sot-r.1   102604337   5'-3' exoribonuclease 4 
 sot-r.1   102592073   5'-3' exoribonuclease 3 
 cit-r.1   102610368   5'-3' exoribonuclease 4 
 cit-r.1   102623051   5'-3' exoribonuclease 3 
 nta-r.1   107828154   5'-3' exoribonuclease 4-like 
 nta-r.1   107830742   5'-3' exoribonuclease 3 
 nta-r.1   107809493   5'-3' exoribonuclease 3 
 cre-r.1   CHLRE_16g679900v5   uncharacterized protein 
 cre-r.1   CHLRE_06g280050v5   uncharacterized protein 

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Top 50 coexpressed genes to 4334408 (osa-e.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 4334408 (osa-e.1 coexpression data)

CoexMap"4334408"


osaLOC4334408 | Entrez gene ID : 4334408    
Species osa tae hvu bdi zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 1 3 2 3 3 3 2 3 3 3 3 3 3 3 3 2 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG osa04016 [list] [network] MAPK signaling pathway - plant (166 genes)
GO BP
GO CC
GO MF
GO:0004527 [list] [network] exonuclease activity  (93 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (840 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3512 genes)  IEA  
Protein XP_066164618.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 1,  nucl_plas 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_066164618.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_066164618.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

osa-e.1
for
4334408
osa-u.5
for
4334408
osa-r.6
for
4334408
osa-m.8
for
4334408
osa-u.5
for
4324952
osa-u.5
for
4329368
tae-r.2
for
123184528
hvu-r.1
for
123400127
hvu-r.1
for
123444770
hvu-r.1
for
123452664
bdi-r.1
for
100835512
bdi-r.1
for
100823403
zma-u.5
for
103649964
zma-u.5
for
100384297
zma-u.5
for
103641862
sbi-r.1
for
8085812
sbi-r.1
for
8083058
sbi-r.1
for
8058573
ath-u.5
for
XRN2
ath-u.5
for
XRN4
ath-u.5
for
XRN3
gma-u.5
for
100817715
gma-u.5
for
100793385
sly-u.5
for
101248085
sly-u.5
for
XRN4
sly-u.5
for
101258556
bra-r.6
for
103838732
bra-r.6
for
103828020
bra-r.6
for
103852968
vvi-u.5
for
100263222
vvi-u.5
for
100253751
vvi-u.5
for
100260845
ppo-u.5
for
7493956
ppo-u.5
for
18110978
ppo-u.5
for
18104156
mtr-u.5
for
112416443
mtr-u.5
for
112418725
mtr-u.5
for
112421174
ghi-r.1
for
107943427
ghi-r.1
for
107901512
ghi-r.1
for
107902649
bna-r.1
for
106390968
bna-r.1
for
106397301
bna-r.1
for
111215767
sot-r.1
for
102589619
sot-r.1
for
102604337
sot-r.1
for
102592073
cit-r.1
for
102610368
cit-r.1
for
102623051
nta-r.1
for
107828154
nta-r.1
for
107830742
nta-r.1
for
107809493
cre-r.1
for
CHLRE_16g679900v5
cre-r.1
for
CHLRE_06g280050v5


Ortholog ID: 1091
Species osa osa osa tae hvu hvu hvu bdi bdi zma zma zma sbi sbi sbi ath ath ath gma gma sly sly sly bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit nta nta nta cre cre
Symbol LOC4334408 LOC4324952 LOC4329368 LOC123071578 LOC123400127 LOC123444770 LOC123452664 LOC100835512 LOC100823403 LOC100384297 LOC103641862 LOC100501093 LOC8085812 LOC8083058 LOC8071116 XRN2 XRN4 XRN3 LOC100793385 LOC100785683 LOC101248085 XRN4 LOC101258556 LOC103838732 LOC103828020 LOC103852968 LOC100263222 LOC100253751 LOC7493956 LOC18110978 LOC18104156 LOC112421174 LOC112421269 LOC11429796 LOC107943427 LOC107901512 LOC107957582 LOC106397301 LOC111215767 LOC106421638 LOC102589619 LOC102604337 LOC102592073 LOC102610368 LOC102623051 LOC107808663 LOC107785646 LOC107780231 CHLRE_16g679900v5 CHLRE_06g280050v5
Function* 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 2 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 uncharacterized LOC100501093 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 exoribonuclease 2 exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3-like protein ETHYLENE-INSENSITIVE5 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 2 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4-like uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04016 MAPK signaling pathway - plant 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa04075 Plant hormone signal transduction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03013 Nucleocytoplasmic transport 5
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04712 Circadian rhythm - plant 2
hvu03018 RNA degradation 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03040 Spliceosome 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03450 Non-homologous end-joining 3
bna04016 MAPK signaling pathway - plant 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00600 Sphingolipid metabolism 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4334408 4324952 4329368 123071578 123400127 123444770 123452664 100835512 100823403 100384297 103641862 100501093 8085812 8083058 8071116 834261 841891 843900 100793385 100785683 101248085 100147714 101258556 103838732 103828020 103852968 100263222 100253751 7493956 18110978 18104156 112421174 112421269 11429796 107943427 107901512 107957582 106397301 111215767 106421638 102589619 102604337 102592073 102610368 102623051 107808663 107785646 107780231 66056704 5720902
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