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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   XRN3   5'-3' exoribonuclease 3 
 ath-r.7   XRN3   5'-3' exoribonuclease 3 
 ath-m.9   XRN3   5'-3' exoribonuclease 3 
 ath-e.2   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.bio   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.hor   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.lig   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.str   XRN3   5'-3' exoribonuclease 3 
 ath-m.4.tis   XRN3   5'-3' exoribonuclease 3 
 ath-u.5   XRN2   exoribonuclease 2 
 ath-u.5   XRN4   exoribonuclease 4 
 gma-u.5   100783068   5'-3' exoribonuclease 3 
 gma-u.5   100785683   5'-3' exoribonuclease 3 
 gma-u.5   100789497   5'-3' exoribonuclease 4 
 vvi-u.5   100253751   5'-3' exoribonuclease 4 
 vvi-u.5   100263222   5'-3' exoribonuclease 3 
 vvi-u.5   100260845   5'-3' exoribonuclease 3 
 ppo-u.5   7493956   5'-3' exoribonuclease 3 
 ppo-u.5   18110978   5'-3' exoribonuclease 4 
 ppo-u.5   18104156   5'-3' exoribonuclease 4 
 mtr-u.5   112416443   5'-3' exoribonuclease 3 
 mtr-u.5   112418725   5'-3' exoribonuclease 3 
 mtr-u.5   112421174   5'-3' exoribonuclease 3 
 sly-u.5   101248085   5'-3' exoribonuclease 3-like 
 sly-u.5   XRN4   protein ETHYLENE-INSENSITIVE5 
 sly-u.5   101258556   5'-3' exoribonuclease 3 
 osa-u.5   4324952   5'-3' exoribonuclease 3 
 osa-u.5   4329368   5'-3' exoribonuclease 2 
 osa-u.5   4334408   5'-3' exoribonuclease 4 
 zma-u.5   103649964   5'-3' exoribonuclease 3 
 zma-u.5   100384297   5'-3' exoribonuclease 4 
 zma-u.5   103654383   5'-3' exoribonuclease 2 

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Top 50 coexpressed genes to XRN3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to XRN3 (ath-u.5 coexpression data)

CoexMap"843900"


athXRN3 | Entrez gene ID : 843900      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 11 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (2 genes)  IMP  
GO:0000967 [list] [network] rRNA 5'-end processing  (4 genes)  IMP  
GO:0010587 [list] [network] miRNA catabolic process  (8 genes)  IMP  
GO:0060149 [list] [network] negative regulation of post-transcriptional gene silencing  (9 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA IMP ISM  
GO MF
GO:0004534 [list] [network] 5'-3' RNA exonuclease activity  (4 genes)  IDA IGI  
Protein NP_565114.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for NP_565114.1)
Subcellular
localization
TargetP
scret 6,  other 5  (predict for NP_565114.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
XRN3
ath-r.7
for
XRN3
ath-m.9
for
XRN3
ath-e.2
for
XRN3
ath-m.4.bio
for
XRN3
ath-m.4.hor
for
XRN3
ath-m.4.lig
for
XRN3
ath-m.4.str
for
XRN3
ath-m.4.tis
for
XRN3
ath-u.5
for
XRN2
ath-u.5
for
XRN4
gma-u.5
for
100783068
gma-u.5
for
100785683
gma-u.5
for
100789497
vvi-u.5
for
100253751
vvi-u.5
for
100263222
vvi-u.5
for
100260845
ppo-u.5
for
7493956
ppo-u.5
for
18110978
ppo-u.5
for
18104156
mtr-u.5
for
112416443
mtr-u.5
for
112418725
mtr-u.5
for
112421174
sly-u.5
for
101248085
sly-u.5
for
XRN4
sly-u.5
for
101258556
osa-u.5
for
4324952
osa-u.5
for
4329368
osa-u.5
for
4334408
zma-u.5
for
103649964
zma-u.5
for
100384297
zma-u.5
for
103654383


Ortholog ID: 1091
Species ath ath bra bra bna bna ghi ghi cit cit gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma hvu hvu sbi sbi bdi bdi cre cre
Symbol XRN3 XRN4 LOC103838732 LOC103828020 LOC106397301 LOC106421638 LOC107943427 LOC107901512 LOC102623051 LOC102610368 LOC100785683 LOC100263222 LOC100253751 LOC18110978 LOC7493956 LOC112421174 LOC112421269 XRN4 LOC101258556 LOC102604337 LOC102592073 LOC107780231 LOC107808663 LOC4334408 LOC4324952 LOC103641862 LOC100384297 LOC123444770 LOC123400127 LOC8085812 LOC8083058 LOC100823403 LOC100835512 CHLRE_16g679900v5 CHLRE_06g280050v5
Function* 5'-3' exoribonuclease 3 exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 2 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 protein ETHYLENE-INSENSITIVE5 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3-like 5'-3' exoribonuclease 3 5'-3' exoribonuclease 4 5'-3' exoribonuclease 4-like 5'-3' exoribonuclease 3 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ghi03040 Spliceosome 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00600 Sphingolipid metabolism 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta04016 MAPK signaling pathway - plant 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04016 MAPK signaling pathway - plant 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
osa04075 Plant hormone signal transduction 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu04712 Circadian rhythm - plant 2
hvu03018 RNA degradation 2
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843900 841891 103838732 103828020 106397301 106421638 107943427 107901512 102623051 102610368 100785683 100263222 100253751 18110978 7493956 112421174 112421269 100147714 101258556 102604337 102592073 107780231 107808663 4334408 4324952 103641862 100384297 123444770 123400127 8085812 8083058 100823403 100835512 66056704 5720902
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