ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-e.1	4337724	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
osa-u.5	4337724	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
osa-r.6	4337724	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
osa-m.8	4337724	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
tae-r.2	123180332	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
tae-r.2	123190252	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
tae-r.2	123110627	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
hvu-r.1	123420418	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
bdi-r.1	100844572	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
zma-u.5	100217208	uncharacterized LOC100217208
sbi-r.1	8071280	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
sbi-r.1	8072837	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
sbi-r.1	8078323	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
ath-u.5	AT5G26760	RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein
gma-u.5	100804112	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
gma-u.5	100800951	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
sly-u.5	101260378	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
bra-r.6	103854695	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
vvi-u.5	100258021	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
ppo-u.5	7475177	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
mtr-u.5	25483637	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
ghi-r.1	107909283	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
ghi-r.1	107886784	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
bna-r.1	106382546	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
bna-r.1	106354996	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
bna-r.1	106348712	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
sot-r.1	102590034	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
cit-r.1	102631165	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
nta-r.1	107826173	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
nta-r.1	107793617	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
cre-r.1	CHLRE_12g532700v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(3003 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5212 genes)	IEA

GO MF

GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity	(8 genes)	IEA
GO:0043175 [list] [network] RNA polymerase core enzyme binding	(22 genes)	IEA

Protein

NP_001407079.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cysk 2, nucl 1

(predict for NP_001407079.1)

Subcellular
localization
TargetP

other 5, mito 4

(predict for NP_001407079.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-e.1 for 4337724	osa-u.5 for 4337724	osa-r.6 for 4337724	osa-m.8 for 4337724	tae-r.2 for 123180332	tae-r.2 for 123190252	tae-r.2 for 123110627	hvu-r.1 for 123420418	bdi-r.1 for 100844572	zma-u.5 for 100217208	sbi-r.1 for 8071280	sbi-r.1 for 8072837	sbi-r.1 for 8078323	ath-u.5 for AT5G26760	gma-u.5 for 100804112	gma-u.5 for 100800951	sly-u.5 for 101260378	bra-r.6 for 103854695	vvi-u.5 for 100258021	ppo-u.5 for 7475177	mtr-u.5 for 25483637	ghi-r.1 for 107909283	ghi-r.1 for 107886784	bna-r.1 for 106382546	bna-r.1 for 106354996	bna-r.1 for 106348712	sot-r.1 for 102590034	cit-r.1 for 102631165	nta-r.1 for 107826173	nta-r.1 for 107793617	cre-r.1 for CHLRE_12g532700v5

Ortholog

Ortholog ID: 8165

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

uncharacterized LOC100217208

putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein

putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	4
ath04120	Ubiquitin mediated proteolysis	3
ath04141	Protein processing in endoplasmic reticulum	3
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma04141	Protein processing in endoplasmic reticulum	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	3
ghi03013	Nucleocytoplasmic transport	2
ghi00510	N-Glycan biosynthesis	2
ghi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

Expression

Expression pattern

Entrez Gene ID^*

4337724

123180332

123190252

123110627

123420418

100844572

100217208

8071280

8072837

8078323

832734

100804112

100800951

101260378

103854695

100258021

7475177

25483637

107909283

107886784

106354996

106348712

125580871

102590034

102631165

107826173

107793617

5718548

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4337724 (osa-e.1 coexpression data)

Top 50 enrichment test to 4337724 (osa-e.1 coexpression data)


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	1	1	1	3	1	2	1	1	1	1	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4337724 (osa-e.1 coexpression data)

Top 50 enrichment test to 4337724 (osa-e.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**