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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT2G37220   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   CP29   chloroplast RNA-binding protein 29 
 bra-r.6   103841271   29 kDa ribonucleoprotein, chloroplastic 
 bra-r.6   103857667   RNA-binding protein CP29B, chloroplastic 
 bra-r.6   103865583   RNA-binding protein CP29B, chloroplastic 
 bna-r.1   106352831   29 kDa ribonucleoprotein, chloroplastic-like 
 bna-r.1   106452455   29 kDa ribonucleoprotein, chloroplastic 
 bna-r.1   106441071   RNA-binding protein CP29B, chloroplastic 
 ghi-r.1   107948368   29 kDa ribonucleoprotein A, chloroplastic 
 ghi-r.1   107899636   29 kDa ribonucleoprotein A, chloroplastic 
 ghi-r.1   107891135   29 kDa ribonucleoprotein A, chloroplastic 
 cit-r.1   102621789   RNA-binding protein CP29B, chloroplastic 
 gma-u.5   100786275   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100812934   ribonucleoprotein At2g37220, chloroplastic-like 
 vvi-u.5   100246501   29 kDa ribonucleoprotein A, chloroplastic 
 ppo-u.5   7486483   RNA-binding protein CP29B, chloroplastic 
 ppo-u.5   18100185   RNA-binding protein CP29B, chloroplastic 
 mtr-u.5   11433272   29 kDa ribonucleoprotein A, chloroplastic 
 sly-u.5   101245790   29 kDa ribonucleoprotein A, chloroplastic 
 sly-u.5   101255645   29 kDa ribonucleoprotein B, chloroplastic 
 sot-r.1   102577524   single-stranded DNA binding protein precursor 
 sot-r.1   102585227   29 kDa ribonucleoprotein B, chloroplastic-like 
 nta-r.1   107824003   29 kDa ribonucleoprotein A, chloroplastic 
 nta-r.1   107814688   31 kDa ribonucleoprotein, chloroplastic 
 nta-r.1   107792669   29 kDa ribonucleoprotein B, chloroplastic 
 osa-u.5   4332957   RNA-binding protein CP29B, chloroplastic 
 osa-u.5   4344001   29 kDa ribonucleoprotein A, chloroplastic 
 zma-u.5   100274547   uncharacterized LOC100274547 
 zma-u.5   100282223   uncharacterized LOC100282223 
 zma-u.5   100285364   uncharacterized LOC100285364 
 tae-r.2   123051986   29 kDa ribonucleoprotein A, chloroplastic 
 tae-r.2   123085968   RNA-binding protein CP29B, chloroplastic 
 tae-r.2   123187853   29 kDa ribonucleoprotein A, chloroplastic 
 hvu-r.1   123448659   RNA-binding protein CP29B, chloroplastic-like 
 hvu-r.1   123425182   29 kDa ribonucleoprotein A, chloroplastic-like 
 sbi-r.1   8080763   RNA-binding protein CP29B, chloroplastic 
 sbi-r.1   8079368   RNA-binding protein CP29B, chloroplastic 
 bdi-r.1   100832013   RNA-binding protein CP29B, chloroplastic 
 bdi-r.1   100826795   RNA-binding protein CP29B, chloroplastic 

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Top 50 coexpressed genes to AT2G37220 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G37220 (ath-m.4.hor coexpression data)

CoexMap"818299"


athAT2G37220 | Entrez gene ID : 818299      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 1 2 2 3 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045087 [list] [network] innate immune response  (157 genes)  IDA  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0010319 [list] [network] stromule  (37 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_181259.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_181259.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_181259.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT2G37220
ath-u.5
for
AT2G37220
ath-r.7
for
AT2G37220
ath-m.9
for
AT2G37220
ath-e.2
for
AT2G37220
ath-m.4.bio
for
AT2G37220
ath-m.4.lig
for
AT2G37220
ath-m.4.str
for
AT2G37220
ath-m.4.tis
for
AT2G37220
ath-u.5
for
CP29
bra-r.6
for
103841271
bra-r.6
for
103857667
bra-r.6
for
103865583
bna-r.1
for
106352831
bna-r.1
for
106452455
bna-r.1
for
106441071
ghi-r.1
for
107948368
ghi-r.1
for
107899636
ghi-r.1
for
107891135
cit-r.1
for
102621789
gma-u.5
for
100786275
gma-u.5
for
100812934
vvi-u.5
for
100246501
ppo-u.5
for
7486483
ppo-u.5
for
18100185
mtr-u.5
for
11433272
sly-u.5
for
101245790
sly-u.5
for
101255645
sot-r.1
for
102577524
sot-r.1
for
102585227
nta-r.1
for
107824003
nta-r.1
for
107814688
nta-r.1
for
107792669
osa-u.5
for
4332957
osa-u.5
for
4344001
zma-u.5
for
100274547
zma-u.5
for
100282223
zma-u.5
for
100285364
tae-r.2
for
123051986
tae-r.2
for
123085968
tae-r.2
for
123187853
hvu-r.1
for
123448659
hvu-r.1
for
123425182
sbi-r.1
for
8080763
sbi-r.1
for
8079368
bdi-r.1
for
100832013
bdi-r.1
for
100826795


Ortholog ID: 3319
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol AT2G37220 CP29 LOC103857667 LOC103865583 LOC103867216 LOC106441071 LOC106366108 LOC106392732 LOC107948368 LOC107891135 LOC107889598 LOC102621789 LOC100786275 LOC100812934 LOC100246501 LOC7486483 LOC18100185 LOC11433272 LOC101245790 LOC101255645 LOC102577524 LOC102585227 LOC107814688 LOC107792669 LOC107815238 LOC4332957 LOC4344001 LOC100274547 LOC100282223 LOC100285364 LOC123187853 LOC123092005 LOC123044103 LOC123448659 LOC123425182 LOC8080763 LOC8079368 LOC100832013 LOC100826795
Function* RNA-binding (RRM/RBD/RNP motifs) family protein chloroplast RNA-binding protein 29 RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein ribonucleoprotein At2g37220, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic single-stranded DNA binding protein precursor 29 kDa ribonucleoprotein B, chloroplastic-like 31 kDa ribonucleoprotein, chloroplastic 29 kDa ribonucleoprotein B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic uncharacterized LOC100274547 uncharacterized LOC100282223 uncharacterized LOC100285364 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic 29 kDa ribonucleoprotein A, chloroplastic RNA-binding protein CP29B, chloroplastic-like 29 kDa ribonucleoprotein A, chloroplastic-like RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic RNA-binding protein CP29B, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00340 Histidine metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 3
vvi03010 Ribosome 2
vvi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
sot00620 Pyruvate metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
zma03060 Protein export 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi00860 Porphyrin metabolism 2
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818299 824514 103857667 103865583 103867216 106441071 106366108 106392732 107948368 107891135 107889598 102621789 100786275 100812934 100246501 7486483 18100185 11433272 101245790 101255645 102577524 102585227 107814688 107792669 107815238 4332957 4344001 100274547 100282223 100285364 123187853 123092005 123044103 123448659 123425182 8080763 8079368 100832013 100826795
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