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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-u.5   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-r.7   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.9   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-e.2   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.bio   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.lig   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.str   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.tis   AT5G42310   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103862617   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 bna-r.1   106441265   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 bna-r.1   125585306   pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like 
 ghi-r.1   107922536   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ghi-r.1   107918001   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ghi-r.1   107904012   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 cit-r.1   102610977   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 gma-u.5   100808427   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 gma-u.5   100778551   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 vvi-u.5   100263329   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ppo-u.5   7496866   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 ppo-u.5   7494690   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 mtr-u.5   25490300   pentatricopeptide repeat-containing protein At5g42310, chloroplastic 
 sly-u.5   101245385   pentatricopeptide repeat-containing protein 
 sot-r.1   102595862   pentatricopeptide repeat-containing protein At5g42310, mitochondrial 
 nta-r.1   107828998   uncharacterized LOC107828998 
 nta-r.1   107789009   uncharacterized LOC107789009 
 osa-u.5   4343532   pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like 
 zma-u.5   732792   chloroplast RNA processing 1 
 tae-r.2   123044597   pentatricopeptide repeat-containing protein CRP1, chloroplastic 
 tae-r.2   123188356   pentatricopeptide repeat-containing protein CRP1, chloroplastic 
 hvu-r.1   123425777   pentatricopeptide repeat-containing protein CRP1, chloroplastic 
 sbi-r.1   8081724   pentatricopeptide repeat-containing protein At5g42310, mitochondrial 
 bdi-r.1   100821581   pentatricopeptide repeat-containing protein CRP1, chloroplastic 

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Top 50 coexpressed genes to AT5G42310 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G42310 (ath-m.4.hor coexpression data)

CoexMap"834236"


athAT5G42310 | Entrez gene ID : 834236    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 1 1 2 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010239 [list] [network] chloroplast mRNA processing  (12 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  IDA  
GO:0042651 [list] [network] thylakoid membrane  (348 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_199046.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_199046.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_199046.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT5G42310
ath-u.5
for
AT5G42310
ath-r.7
for
AT5G42310
ath-m.9
for
AT5G42310
ath-e.2
for
AT5G42310
ath-m.4.bio
for
AT5G42310
ath-m.4.lig
for
AT5G42310
ath-m.4.str
for
AT5G42310
ath-m.4.tis
for
AT5G42310
bra-r.6
for
103862617
bna-r.1
for
106441265
bna-r.1
for
125585306
ghi-r.1
for
107922536
ghi-r.1
for
107918001
ghi-r.1
for
107904012
cit-r.1
for
102610977
gma-u.5
for
100808427
gma-u.5
for
100778551
vvi-u.5
for
100263329
ppo-u.5
for
7496866
ppo-u.5
for
7494690
mtr-u.5
for
25490300
sly-u.5
for
101245385
sot-r.1
for
102595862
nta-r.1
for
107828998
nta-r.1
for
107789009
osa-u.5
for
4343532
zma-u.5
for
732792
tae-r.2
for
123044597
tae-r.2
for
123188356
hvu-r.1
for
123425777
sbi-r.1
for
8081724
bdi-r.1
for
100821581


Ortholog ID: 9713
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol AT5G42310 LOC103862617 LOC106441265 LOC125585306 LOC107922536 LOC107904012 LOC107901451 LOC102610977 LOC100808427 LOC100778551 LOC100263329 LOC7496866 LOC7494690 LOC25490300 LOC101245385 LOC102595862 LOC107828998 LOC107789009 LOC4343532 LOC732792 LOC123044597 LOC123188356 LOC123425777 LOC8081724 LOC100821581
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein At5g42310, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At5g42310, mitochondrial uncharacterized LOC107828998 uncharacterized LOC107789009 pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic-like chloroplast RNA processing 1 pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein CRP1, chloroplastic pentatricopeptide repeat-containing protein At5g42310, mitochondrial pentatricopeptide repeat-containing protein CRP1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00940 Phenylpropanoid biosynthesis 2
sbi00941 Flavonoid biosynthesis 2
sbi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834236 103862617 106441265 125585306 107922536 107904012 107901451 102610977 100808427 100778551 100263329 7496866 7494690 25490300 101245385 102595862 107828998 107789009 4343532 732792 123044597 123188356 123425777 8081724 100821581
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